Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L2Y97_RS18255 Genome accession   NZ_CP095742
Coordinates   4047346..4048758 (+) Length   470 a.a.
NCBI ID   WP_247429467.1    Uniprot ID   -
Organism   Luteibacter aegosomatissinici strain 353     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4042346..4053758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y97_RS18240 (L2Y97_18240) sucD 4043334..4044206 (-) 873 WP_045830691.1 succinate--CoA ligase subunit alpha -
  L2Y97_RS18245 (L2Y97_18245) sucC 4044220..4045380 (-) 1161 WP_247429465.1 ADP-forming succinate--CoA ligase subunit beta -
  L2Y97_RS18250 (L2Y97_18250) - 4045656..4047278 (+) 1623 WP_247436885.1 HAMP domain-containing sensor histidine kinase -
  L2Y97_RS18255 (L2Y97_18255) pilR 4047346..4048758 (+) 1413 WP_247429467.1 sigma-54 dependent transcriptional regulator Regulator
  L2Y97_RS18260 (L2Y97_18260) - 4048826..4049200 (-) 375 WP_247429469.1 hypothetical protein -
  L2Y97_RS18265 (L2Y97_18265) - 4049360..4049833 (-) 474 WP_247429471.1 hypothetical protein -
  L2Y97_RS18270 (L2Y97_18270) - 4050219..4050548 (+) 330 WP_247429473.1 hypothetical protein -
  L2Y97_RS18275 (L2Y97_18275) - 4050564..4050872 (-) 309 WP_247429474.1 hypothetical protein -
  L2Y97_RS18280 (L2Y97_18280) - 4051070..4051537 (+) 468 WP_247429476.1 hypothetical protein -
  L2Y97_RS18285 (L2Y97_18285) - 4051607..4053169 (-) 1563 WP_247429478.1 response regulator -
  L2Y97_RS18290 (L2Y97_18290) - 4053186..4053632 (-) 447 WP_247429480.1 response regulator -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51017.75 Da        Isoelectric Point: 6.2056

>NTDB_id=678007 L2Y97_RS18255 WP_247429467.1 4047346..4048758(+) (pilR) [Luteibacter aegosomatissinici strain 353]
MSKQTVLVIDDERDIRELLTITLGRMELDVDAVGSVSEARNALANRRYDLCFTDMRLPDGSGQEIIELISATYPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIHLLRRLVKTALRLSEERRSEAGAKAAPGADRLIGDSPVMVEVRGKIAKLARN
QAPVYIAGESGVGKELVARLIHELGPRATGTFVPVNCGAIPSELMESEFFGHRKGSFTGAHADKEGLFQAAHGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLAALVEQGQFRQDLFYRINVIELRVPPLRERRGDVPR
LADFILRQLAVESGGAPGKLKPDALAALEAYQFPGNVRELENILERAMAMCEGDTIEADDLMLPQRTAMPGDVAPAAIGA
PVPVAGVPAGSPAPRNPAADGSLEDYITNIERDTIIKALEESRYNKTATAKKLGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=678007 L2Y97_RS18255 WP_247429467.1 4047346..4048758(+) (pilR) [Luteibacter aegosomatissinici strain 353]
ATGAGCAAGCAGACTGTCCTGGTCATCGACGACGAGCGGGACATCCGCGAGTTGTTGACCATCACTCTCGGTCGAATGGA
ACTCGACGTCGACGCCGTGGGGAGCGTCAGCGAGGCGCGGAACGCCCTGGCCAACCGCCGTTACGACCTGTGTTTCACCG
ACATGCGGCTGCCCGATGGCAGTGGCCAGGAGATCATTGAGCTGATCTCGGCCACGTACCCCGACATGCCGGTGGCCATG
ATCACCGCCTATGGCAACGTGGATGCGGCCGTGAACGCCCTGAAAGCGGGCGCGTTCGATTTCGTCTCCAAGCCGGTGGA
TATCCACCTGCTGCGCCGCCTGGTGAAGACGGCCCTGCGCCTTTCCGAGGAACGCCGCAGCGAAGCCGGGGCCAAGGCCG
CCCCGGGCGCCGACCGCCTGATCGGCGATTCGCCGGTCATGGTCGAGGTGCGCGGCAAGATCGCCAAACTGGCCCGCAAC
CAGGCCCCGGTCTATATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGGCTCATCCACGAACTGGGCCCACG
CGCCACGGGCACCTTCGTGCCGGTGAACTGCGGTGCCATTCCCTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGTGCCCATGCCGACAAGGAAGGCCTGTTCCAGGCCGCTCATGGCGGCACGCTGTTCCTCGATGAA
GTCGCCGAGCTGCCCCTGCACATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCCATCGGCGGCCG
CGACGAAATTCCCGTGGACGTGCGCATCCTGTCCGCCACGCACAAGAACCTCGCCGCGCTGGTCGAGCAGGGCCAGTTCC
GCCAGGATCTGTTCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGGGAACGCCGCGGTGACGTGCCGCGC
CTGGCCGATTTCATCCTGCGCCAGCTCGCCGTGGAATCCGGCGGCGCACCGGGCAAGCTCAAGCCTGATGCGCTGGCCGC
CCTGGAGGCCTACCAATTCCCGGGCAACGTACGCGAGCTGGAGAACATCCTCGAACGCGCCATGGCCATGTGCGAAGGCG
ACACGATCGAGGCCGATGACCTGATGCTGCCGCAGCGTACGGCCATGCCGGGCGATGTGGCACCTGCCGCCATCGGCGCA
CCGGTGCCCGTTGCCGGCGTGCCGGCGGGCTCGCCCGCACCGCGCAACCCTGCGGCGGATGGTTCGCTCGAGGACTACAT
CACCAACATCGAGCGCGACACGATCATCAAGGCCCTGGAAGAGTCCCGCTACAACAAGACCGCCACCGCCAAGAAGCTCG
GCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(429-467)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.064

100

0.611
  pilR Acinetobacter baumannii strain A118

48.927

99.149

0.485