Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L2Y94_RS17485 Genome accession   NZ_CP095740
Coordinates   3879048..3880454 (+) Length   468 a.a.
NCBI ID   WP_247370127.1    Uniprot ID   -
Organism   Luteibacter aegosomatis strain 321     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3874048..3885454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y94_RS21290 - 3874783..3874914 (+) 132 WP_256452144.1 hypothetical protein -
  L2Y94_RS17470 (L2Y94_17470) sucD 3874999..3875871 (-) 873 WP_247370118.1 succinate--CoA ligase subunit alpha -
  L2Y94_RS17475 (L2Y94_17475) sucC 3875886..3877046 (-) 1161 WP_247370121.1 ADP-forming succinate--CoA ligase subunit beta -
  L2Y94_RS17480 (L2Y94_17480) - 3877334..3878980 (+) 1647 WP_247370124.1 ATP-binding protein -
  L2Y94_RS17485 (L2Y94_17485) pilR 3879048..3880454 (+) 1407 WP_247370127.1 sigma-54 dependent transcriptional regulator Regulator
  L2Y94_RS17490 (L2Y94_17490) - 3880540..3881415 (-) 876 WP_247370129.1 LysR family transcriptional regulator -
  L2Y94_RS17495 (L2Y94_17495) - 3881525..3882673 (+) 1149 WP_247370162.1 alpha/beta hydrolase -
  L2Y94_RS17500 (L2Y94_17500) - 3882706..3884256 (-) 1551 WP_247370179.1 response regulator -
  L2Y94_RS17505 (L2Y94_17505) - 3884282..3884728 (-) 447 WP_144915572.1 response regulator -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 50704.30 Da        Isoelectric Point: 5.9450

>NTDB_id=677968 L2Y94_RS17485 WP_247370127.1 3879048..3880454(+) (pilR) [Luteibacter aegosomatis strain 321]
MSKQTVLVIDDERDIRELLTITLGRMELDVDAVGSVTDARSALAGRRYDLCFTDMRLPDGSGQEIIELIAASYPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIHLLRRLVRTALRLSEERKAESGAKAAGGPGADRLIGDSPVMAEVRGKIAKLA
RNQAPVYIAGESGVGKELVARLIHELGPRSAGAFVPVNCGAIPSELMESEFFGHRKGSFTGAHADKEGLFQAAQGGTLFL
DEVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLAALVEQGLFRQDLFYRINVIELRVPPLRERRGDV
PKLADFVLRQLADEAGTAPNRLRPEALAALEAYHFPGNVRELENILERAMAMCEGDTIEADDLMLPQRAPAAVPTQATPE
SVLAAAAGIPAPVAAGHDGSLEDYISNIERDTIIKALEESRYNKTATAKKLGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=677968 L2Y94_RS17485 WP_247370127.1 3879048..3880454(+) (pilR) [Luteibacter aegosomatis strain 321]
ATGAGCAAGCAGACCGTACTGGTCATCGACGACGAGCGGGACATCCGTGAGTTGCTGACCATCACCCTGGGCCGAATGGA
ACTCGACGTCGACGCCGTGGGCAGCGTCACGGACGCACGGAGCGCCCTCGCGGGGCGTCGTTACGACCTTTGCTTCACCG
ACATGCGCCTTCCCGACGGCAGCGGCCAGGAGATCATCGAGCTGATCGCGGCCAGCTATCCCGACATGCCCGTGGCGATG
ATCACCGCTTACGGCAACGTCGATGCCGCGGTCAACGCGCTGAAGGCCGGCGCCTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCACCTGCTGCGACGCCTGGTACGCACCGCCTTGCGCCTGTCCGAAGAGCGCAAGGCGGAAAGCGGCGCCAAGGCGG
CCGGCGGCCCGGGCGCCGACCGCCTCATCGGCGATTCGCCCGTGATGGCCGAGGTGCGCGGCAAGATCGCCAAGCTCGCC
CGTAACCAGGCGCCCGTGTACATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCCCGCCTGATCCACGAGCTGGG
CCCGCGCTCGGCCGGCGCCTTCGTGCCGGTGAACTGCGGCGCCATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCC
ATCGCAAGGGCAGCTTCACCGGGGCGCACGCCGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACGCTGTTCCTC
GACGAAGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCCATCGG
CGGACGCGACGAGATTCCCGTCGACGTGCGCATCCTCTCGGCCACGCACAAGAACCTCGCCGCGCTCGTCGAACAAGGCC
TGTTCCGCCAGGATCTCTTCTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGGCGACGTG
CCGAAGCTCGCCGACTTCGTCCTGCGCCAACTGGCCGACGAGGCGGGCACGGCACCGAATCGCCTGCGTCCCGAAGCCCT
CGCGGCGTTGGAGGCGTATCACTTTCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAGCGCGCGATGGCGATGTGCG
AGGGCGACACCATCGAGGCCGACGACCTGATGCTGCCGCAACGCGCGCCTGCCGCGGTGCCGACGCAGGCCACGCCGGAA
TCGGTGCTCGCGGCGGCGGCGGGCATCCCCGCGCCGGTGGCCGCCGGCCATGACGGCTCGCTCGAGGATTACATCTCGAA
CATCGAGCGCGACACGATCATCAAGGCGCTGGAAGAGTCGCGTTACAACAAGACGGCGACGGCCAAGAAGCTGGGAATCA
CGTTCCGGGCGTTGCGGTACAAGTTGAAGAAGCTCGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Bacterial regulatory protein, Fis family (HTH_8)

(426-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.684

100

0.607
  pilR Acinetobacter baumannii strain A118

48.922

99.145

0.485