Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MX663_RS17120 Genome accession   NZ_CP095736
Coordinates   3242141..3242785 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain N4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3237141..3247785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS17085 (MX663_17085) mrpB 3238333..3238764 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  MX663_RS17090 (MX663_17090) mrpC 3238764..3239105 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  MX663_RS17095 (MX663_17095) mrpD 3239098..3240579 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  MX663_RS17100 (MX663_17100) mrpE 3240585..3241061 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  MX663_RS17105 (MX663_17105) mrpF 3241061..3241345 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  MX663_RS17110 (MX663_17110) mnhG 3241329..3241703 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  MX663_RS17115 (MX663_17115) yuxO 3241742..3242122 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  MX663_RS17120 (MX663_17120) comA 3242141..3242785 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  MX663_RS17125 (MX663_17125) comP 3242866..3245166 (-) 2301 WP_088300729.1 histidine kinase Regulator
  MX663_RS17130 (MX663_17130) comX 3245178..3245342 (-) 165 WP_015384519.1 competence pheromone ComX -
  MX663_RS17135 (MX663_17135) - 3245355..3246215 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  MX663_RS17140 (MX663_17140) degQ 3246400..3246540 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  MX663_RS17145 (MX663_17145) - 3246762..3246887 (+) 126 WP_003228793.1 hypothetical protein -
  MX663_RS17150 (MX663_17150) - 3247001..3247369 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=677886 MX663_RS17120 WP_003220716.1 3242141..3242785(-) (comA) [Bacillus subtilis strain N4]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=677886 MX663_RS17120 WP_003220716.1 3242141..3242785(-) (comA) [Bacillus subtilis strain N4]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1