Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LGT42_RS11670 Genome accession   NZ_CP095733
Coordinates   2444099..2445451 (-) Length   450 a.a.
NCBI ID   WP_226073975.1    Uniprot ID   -
Organism   Methylophaga pinxianii strain TMB1265     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439099..2450451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGT42_RS11645 (LGT42_011645) - 2439818..2440387 (-) 570 WP_226073950.1 sigma-E factor negative regulatory protein -
  LGT42_RS11650 (LGT42_011650) rpoE 2440390..2440965 (-) 576 WP_226073952.1 RNA polymerase sigma factor RpoE -
  LGT42_RS11655 (LGT42_011655) nadB 2441094..2442695 (+) 1602 WP_226073955.1 L-aspartate oxidase -
  LGT42_RS11660 (LGT42_011660) - 2442670..2443107 (-) 438 WP_226073957.1 protein YgfX -
  LGT42_RS11665 (LGT42_011665) - 2443187..2444095 (+) 909 WP_226073965.1 hypothetical protein -
  LGT42_RS11670 (LGT42_011670) pilR 2444099..2445451 (-) 1353 WP_226073975.1 sigma-54 dependent transcriptional regulator Regulator
  LGT42_RS11675 (LGT42_011675) - 2445448..2447043 (-) 1596 WP_226073977.1 ATP-binding protein -
  LGT42_RS11680 (LGT42_011680) - 2447043..2447261 (-) 219 WP_226073979.1 PP0621 family protein -
  LGT42_RS11685 (LGT42_011685) typA 2447326..2449158 (-) 1833 WP_226073988.1 translational GTPase TypA -
  LGT42_RS11690 (LGT42_011690) suhB 2449223..2450017 (-) 795 WP_226073990.1 inositol-1-monophosphatase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 50080.89 Da        Isoelectric Point: 6.6415

>NTDB_id=677798 LGT42_RS11670 WP_226073975.1 2444099..2445451(-) (pilR) [Methylophaga pinxianii strain TMB1265]
MNPQALIVDDEPDILDLLSMTLSGMSIDCVTAESIAEAERILSQQSFDLCFTDMRLPDGDGLQLVKSIQLSHPELPVAVI
TAYGNMDLAVTALKSGAFDFVSKPLKLRVLRELVEAALKLSPNRSHKNDRRSRDRLLGETNLMRELRGKVAKLARSQAPV
YISGESGTGKELVARLIHDLGARSDKAFVPVNCGAIPNELVESEFFGHKKGAFTGAVADKQGLFQHAHGGTLFLDEVADL
PLMMQVKLLRAIQEKAIRPVGGHEEINIDVRILSATHKNLAECVEKGIFRQDLFYRLNVIELQVPPLRERKADIPLLTEH
ILQKFAGKTHTVPVQLTDEAMTVLQQYPFPGNVRELENTLERALTWAEGTKITLTDLMLPTIAPTKNTASLMPVATHELN
QDLESHLEEQERAIIEKALTETRWNKTAAAKRLGITFRALRYKLKKLDLE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=677798 LGT42_RS11670 WP_226073975.1 2444099..2445451(-) (pilR) [Methylophaga pinxianii strain TMB1265]
ATGAATCCACAAGCGTTGATTGTCGATGATGAACCGGACATTCTTGATTTACTGTCGATGACCTTATCCGGCATGTCAAT
TGACTGTGTTACCGCTGAAAGTATTGCCGAAGCTGAACGGATTTTATCTCAGCAATCCTTTGATCTGTGTTTTACCGATA
TGCGTTTACCGGATGGAGATGGCTTGCAGCTAGTGAAGAGTATTCAGCTAAGCCATCCGGAGTTACCTGTGGCTGTTATT
ACTGCGTATGGCAATATGGATTTGGCGGTGACTGCACTGAAATCAGGGGCCTTTGACTTTGTCTCCAAGCCCTTAAAATT
ACGTGTTTTACGTGAGTTGGTGGAAGCTGCCTTAAAGTTATCACCAAACCGATCACATAAAAATGACCGTCGATCTCGTG
ATCGGTTATTAGGTGAAACCAACTTGATGCGCGAGTTGCGAGGCAAAGTAGCCAAGCTGGCCCGTAGTCAGGCTCCGGTG
TATATCAGTGGTGAATCCGGCACAGGTAAGGAATTGGTGGCGCGTTTAATCCATGATTTGGGGGCACGATCAGATAAAGC
TTTTGTGCCGGTGAACTGCGGTGCGATTCCAAATGAGTTAGTTGAAAGCGAATTTTTCGGTCACAAAAAAGGCGCTTTTA
CCGGTGCAGTTGCTGATAAACAGGGATTATTTCAGCATGCGCATGGTGGAACATTATTTTTGGATGAAGTCGCTGATTTA
CCGCTGATGATGCAAGTTAAATTATTACGTGCTATTCAGGAAAAAGCCATTCGTCCCGTCGGTGGTCATGAAGAAATCAA
TATTGATGTCAGGATTTTATCGGCCACCCACAAAAATCTGGCGGAATGTGTTGAGAAAGGAATATTCCGCCAGGATTTGT
TTTACCGGCTGAATGTGATCGAATTGCAGGTTCCTCCGTTAAGAGAGCGAAAAGCAGATATTCCTCTATTAACAGAACAT
ATCCTGCAAAAATTCGCGGGTAAAACGCATACTGTCCCGGTTCAATTAACCGATGAGGCGATGACGGTATTACAACAATA
TCCATTTCCTGGAAATGTCCGCGAATTGGAAAATACCCTTGAACGAGCTCTGACATGGGCTGAAGGCACTAAAATCACAT
TGACAGATTTGATGTTGCCAACAATTGCACCAACCAAAAATACTGCCTCGCTCATGCCTGTGGCTACCCACGAGTTAAAC
CAGGATCTGGAAAGTCATCTCGAAGAACAGGAACGGGCCATTATTGAAAAGGCACTCACGGAAACCCGCTGGAATAAAAC
AGCCGCAGCTAAACGCCTGGGTATTACTTTTCGTGCATTACGTTACAAGCTAAAAAAACTGGATCTCGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-114)

Bacterial regulatory protein, Fis family (HTH_8)

(407-447)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.024

99.778

0.609
  pilR Acinetobacter baumannii strain A118

49.675

100

0.509