Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG207_RS19695 Genome accession   NZ_CP109487
Coordinates   4422313..4423725 (+) Length   470 a.a.
NCBI ID   WP_329099796.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01439     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4417313..4428725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG207_RS19675 (OG207_19685) - 4417649..4418074 (+) 426 WP_329099792.1 DUF3592 domain-containing protein -
  OG207_RS19680 (OG207_19690) - 4418419..4419357 (-) 939 WP_329099793.1 Ppx/GppA phosphatase family protein -
  OG207_RS19685 (OG207_19695) - 4419421..4420293 (+) 873 WP_329099794.1 hypothetical protein -
  OG207_RS19690 (OG207_19700) - 4420322..4422097 (-) 1776 WP_329099795.1 hypothetical protein -
  OG207_RS19695 (OG207_19705) radA/sms 4422313..4423725 (+) 1413 WP_329099796.1 DNA repair protein RadA Machinery gene
  OG207_RS19700 (OG207_19710) disA 4424024..4425148 (+) 1125 WP_266603467.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG207_RS19705 (OG207_19715) - 4425295..4426107 (-) 813 WP_329099797.1 hypothetical protein -
  OG207_RS19710 (OG207_19720) - 4426268..4426918 (+) 651 WP_329099798.1 phosphatase PAP2 family protein -
  OG207_RS19715 (OG207_19725) - 4426915..4427892 (+) 978 WP_329099799.1 A/G-specific adenine glycosylase -
  OG207_RS19720 (OG207_19730) - 4428077..4428637 (+) 561 WP_030010715.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49264.46 Da        Isoelectric Point: 8.0042

>NTDB_id=677570 OG207_RS19695 WP_329099796.1 4422313..4423725(+) (radA/sms) [Streptomyces sp. NBC_01439]
MAARTARSSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAALPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKASSDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRSRTPAKERSAE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=677570 OG207_RS19695 WP_329099796.1 4422313..4423725(+) (radA/sms) [Streptomyces sp. NBC_01439]
ATGGCTGCCCGCACCGCTCGTTCATCCGCCAAGGACCGTCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGCGAA
GTGGCTCGGCCGCTGTCCCGAATGCCAGGCCTGGGGCACCGTCGAGGAGATGGGCGCGCCCGCCGTACGGACCACCGCCG
CCGGCCGGGTCTCGACCGCCGCCCTGCCGATCGCGCAGGTCGACGGCCGGACCGCGACCGCCCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTCCTCGGCGGTGGGCTCGTGCCCGGTGCCGTCGTGCTGCTCGCCGGCGAGCCCGGCGTCGGCAAGTC
GACCCTGCTGCTGGACGTCGCGGCGAAGGCGTCCAGTGACGAGCACCGGACGCTGTACGTGACCGGCGAGGAGTCGGCCA
GCCAGGTGCGCCTGCGGGCCGACCGGATCAACGCCCTCAGCGATCACCTCTACCTCGCCGCCGAAACCGATCTGTCCGCC
GTCCTCGGTCATCTCGACGCCGTGAAGCCCTCCCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGTGCGCCCGGCGGCATGGCCCAGGTGCGCGAGGTCGCCGGAGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGGCCA
CCCTCCTCGTCGGCCACGTGACCAAAGACGGAGCCATCGCCGGTCCCCGTCTGTTGGAGCACCTCGTCGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCATCAAGAACCGGTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGGGCCGAGGCCG
TTCCGGGCACCTGCCTGACGGTGACTCTGGAAGGGAAGCGTCCGCTGGTCGCCGAAGTACAGGCGCTGACCGTGGACTCC
CAGATCCCCTCCCCCCGGCGCACGACCTCGGGCCTGGAGACCTCGCGCGTGTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCCACCGTGGGCGGGGTGAAGCTCACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCCTCCGCCGCCAGTGACGTCCCGCTGCCGAAGAACCTCGTGGCGATCGGTGAGGTC
GGCCTGGCCGGCGAGGTGCGACGGGTGACCGGCGTGCAGCGGCGGCTCGCGGAGGCGCACCGGCTGGGATTCACGCACGC
GCTGGTCCCGGCGGACCCGGGGAAGGTGCCGGCCGGAATGAAGGTCATCGAGGTGGCCGACATGGGTGACGCGCTAAGGG
TGTTGCCGCGCGGCCGCTCGCGTACGCCGGCCAAGGAACGGTCCGCGGAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

96.383

0.428
  radA Streptococcus mitis SK321

43.077

96.809

0.417
  radA Streptococcus mitis NCTC 12261

43.077

96.809

0.417
  radA Streptococcus pneumoniae TIGR4

43.142

96.17

0.415
  radA Streptococcus pneumoniae R6

43.142

96.17

0.415
  radA Streptococcus pneumoniae Rx1

43.142

96.17

0.415
  radA Streptococcus pneumoniae D39

43.142

96.17

0.415