Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MXB02_RS07825 Genome accession   NZ_CP095556
Coordinates   1713585..1714220 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas mosselii strain 923     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1708585..1719220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXB02_RS07805 (MXB02_07805) - 1708808..1709740 (+) 933 WP_028690973.1 ABC transporter ATP-binding protein -
  MXB02_RS07810 (MXB02_07810) - 1709737..1710516 (+) 780 WP_028690974.1 ABC transporter permease -
  MXB02_RS07815 (MXB02_07815) - 1710400..1711041 (-) 642 WP_139121109.1 DUF2062 domain-containing protein -
  MXB02_RS07820 (MXB02_07820) comA 1711186..1713402 (+) 2217 WP_247284227.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MXB02_RS07825 (MXB02_07825) exbB 1713585..1714220 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MXB02_RS07830 (MXB02_07830) - 1714217..1714651 (+) 435 WP_028690977.1 biopolymer transporter ExbD -
  MXB02_RS07835 (MXB02_07835) lpxK 1714651..1715655 (+) 1005 WP_062361664.1 tetraacyldisaccharide 4'-kinase -
  MXB02_RS07840 (MXB02_07840) - 1715690..1715875 (+) 186 WP_011532874.1 Trm112 family protein -
  MXB02_RS07845 (MXB02_07845) kdsB 1715872..1716636 (+) 765 WP_247284228.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MXB02_RS07850 (MXB02_07850) - 1716636..1717100 (+) 465 WP_028690980.1 low molecular weight protein-tyrosine-phosphatase -
  MXB02_RS07855 (MXB02_07855) murB 1717097..1718116 (+) 1020 WP_247284229.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=677474 MXB02_RS07825 WP_028690976.1 1713585..1714220(+) (exbB) [Pseudomonas mosselii strain 923]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=677474 MXB02_RS07825 WP_028690976.1 1713585..1714220(+) (exbB) [Pseudomonas mosselii strain 923]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCGATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829