Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MXB02_RS04155 Genome accession   NZ_CP095556
Coordinates   920095..920961 (-) Length   288 a.a.
NCBI ID   WP_247284007.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain 923     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 919275..943458 920095..920961 within 0


Gene organization within MGE regions


Location: 919275..943458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXB02_RS04145 (MXB02_04145) yacG 919275..919475 (-) 201 WP_011535705.1 DNA gyrase inhibitor YacG -
  MXB02_RS04150 (MXB02_04150) coaE 919472..920095 (-) 624 WP_028689885.1 dephospho-CoA kinase -
  MXB02_RS04155 (MXB02_04155) pilD 920095..920961 (-) 867 WP_247284007.1 A24 family peptidase Machinery gene
  MXB02_RS04160 (MXB02_04160) - 920964..922172 (-) 1209 WP_247284008.1 type II secretion system F family protein -
  MXB02_RS04165 (MXB02_04165) - 922400..922810 (+) 411 WP_062575174.1 pilin -
  MXB02_RS04175 (MXB02_04175) - 923030..924385 (+) 1356 WP_247284009.1 tyrosine-type recombinase/integrase -
  MXB02_RS04180 (MXB02_04180) - 924411..925214 (-) 804 WP_247284011.1 hypothetical protein -
  MXB02_RS04185 (MXB02_04185) - 926104..926697 (+) 594 WP_247284012.1 RIP homotypic interaction motif-containing protein -
  MXB02_RS04190 (MXB02_04190) - 927006..927698 (-) 693 WP_247284014.1 MAE_28990/MAE_18760 family HEPN-like nuclease -
  MXB02_RS04195 (MXB02_04195) - 927939..928583 (+) 645 WP_247284015.1 recombinase family protein -
  MXB02_RS04200 (MXB02_04200) - 928753..929619 (+) 867 WP_247284017.1 hypothetical protein -
  MXB02_RS04205 (MXB02_04205) - 930286..933708 (+) 3423 WP_247284018.1 P-loop NTPase fold protein -
  MXB02_RS04210 (MXB02_04210) - 934157..935983 (+) 1827 WP_247284020.1 hypothetical protein -
  MXB02_RS04215 (MXB02_04215) - 936720..936950 (+) 231 WP_247284021.1 hypothetical protein -
  MXB02_RS04220 (MXB02_04220) - 937687..937917 (+) 231 WP_247284022.1 hypothetical protein -
  MXB02_RS04225 (MXB02_04225) - 938043..938261 (-) 219 WP_247284023.1 hypothetical protein -
  MXB02_RS04230 (MXB02_04230) - 938352..938588 (-) 237 WP_247284024.1 hypothetical protein -
  MXB02_RS04235 (MXB02_04235) - 939310..939540 (+) 231 WP_062363944.1 hypothetical protein -
  MXB02_RS04240 (MXB02_04240) - 939760..941007 (+) 1248 WP_247283192.1 IS256 family transposase -
  MXB02_RS04245 (MXB02_04245) - 941115..941711 (-) 597 WP_282599230.1 hypothetical protein -
  MXB02_RS04250 (MXB02_04250) - 941977..942678 (-) 702 WP_197865965.1 hypothetical protein -
  MXB02_RS04255 (MXB02_04255) - 942679..943458 (-) 780 WP_197865966.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31561.70 Da        Isoelectric Point: 7.2985

>NTDB_id=677472 MXB02_RS04155 WP_247284007.1 920095..920961(-) (pilD) [Pseudomonas mosselii strain 923]
MNAWAVIVDHPPFFYTLAAVLGLLVGSFLNVLAYRLPLMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRPIRA
WENIPVLSYLALRGRCSGCKARISARYPLVELATALLSLLVAWHFGPGVEALAVMLLTWGLIGLSLIDAEHQLLPDVLVL
PLLWLGLVVNAFGLLVPLADAVWGAVAGYLSLWTVYWVFKLVTGKEGMGFGDFKLLAMLGAWGGWQVLPLTLMLASLVGA
LIGLTLVRLKRTQMGAALPFGPYLAIAGWIAVLWGDEIVASYLQLLGT

Nucleotide


Download         Length: 867 bp        

>NTDB_id=677472 MXB02_RS04155 WP_247284007.1 920095..920961(-) (pilD) [Pseudomonas mosselii strain 923]
ATGAATGCCTGGGCCGTAATCGTCGATCATCCACCGTTCTTCTACACCCTGGCCGCCGTGCTGGGGTTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGCGTACCGGCTGCCGCTGATGCTCGAGCGCCAGTGGCAGCGCGAGGCGCAGGAGGTGCTGGGGC
TGCCGCAGGCCGAGCACGAGCGCTTCGACCTGTGTTTGCCGGCTTCGCGTTGCCCGCATTGCCAGCGCCCCATCCGGGCG
TGGGAAAACATTCCGGTGCTGAGTTACCTGGCCTTGCGCGGGCGTTGCTCGGGGTGCAAGGCGCGGATCAGTGCGCGTTA
TCCACTGGTGGAACTGGCCACCGCCCTGCTGTCGCTGCTGGTGGCGTGGCATTTCGGGCCGGGCGTGGAGGCACTGGCGG
TGATGCTGCTGACCTGGGGGCTGATCGGCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGTTGTGGCTGGGGTTGGTGGTCAACGCCTTCGGGCTGCTGGTGCCGCTGGCCGACGCGGTGTGGGGCGCGGTGGC
GGGTTACCTGAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTTTGGCGATTTCA
AGCTGCTGGCCATGCTAGGGGCGTGGGGCGGTTGGCAGGTTTTGCCGCTGACCTTGATGCTGGCCTCGCTGGTGGGGGCG
CTGATCGGGCTGACGCTGGTGCGTTTGAAGCGCACGCAGATGGGCGCTGCGCTGCCTTTCGGGCCTTATCTGGCCATTGC
GGGGTGGATCGCAGTGCTCTGGGGTGATGAAATAGTCGCTTCTTACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.197

96.875

0.535
  pilD Acinetobacter baumannii D1279779

52.399

94.097

0.493
  pilD Acinetobacter nosocomialis M2

51.292

94.097

0.483
  pilD Neisseria gonorrhoeae MS11

51.673

93.403

0.483
  pilD Vibrio campbellii strain DS40M4

49.819

96.181

0.479