Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAMI_RS11300 Genome accession   NZ_AP017320
Coordinates   2211000..2211395 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2206000..2216395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMI_RS11275 (SAMI_2071) thiE 2206599..2207240 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  SAMI_RS11280 (SAMI_2072) thiM 2207242..2208033 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  SAMI_RS11285 (SAMI_2073) thiD 2208017..2208847 (-) 831 WP_060829112.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SAMI_RS11290 (SAMI_2074) tenA 2208840..2209529 (-) 690 WP_000396077.1 thiaminase II -
  SAMI_RS11295 (SAMI_2075) sceD 2209916..2210611 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  SAMI_RS11300 (SAMI_2076) ssb 2211000..2211395 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SAMI_RS11305 (SAMI_2077) - 2211589..2212029 (+) 441 WP_000846746.1 YwpF-like family protein -
  SAMI_RS11310 (SAMI_2078) fabZ 2212088..2212528 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SAMI_RS11315 (SAMI_2079) murA 2212562..2213827 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAMI_RS11320 (SAMI_2080) - 2213938..2214171 (-) 234 WP_000384523.1 DUF1146 family protein -
  SAMI_RS11325 - 2214303..2214395 (-) 93 WP_001790611.1 hypothetical protein -
  SAMI_RS11330 (SAMI_2081) - 2214733..2215137 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=67745 SAMI_RS11300 WP_000932694.1 2211000..2211395(-) (ssb) [Staphylococcus aureus strain MI]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=67745 SAMI_RS11300 WP_000932694.1 2211000..2211395(-) (ssb) [Staphylococcus aureus strain MI]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment