Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SAMI_RS10960 Genome accession   NZ_AP017320
Coordinates   2140944..2141660 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain MI     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2135944..2146660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMI_RS10930 (SAMI_2013) - 2136161..2136787 (+) 627 WP_000522381.1 nitroreductase family protein -
  SAMI_RS10935 (SAMI_2014) - 2137148..2137933 (+) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  SAMI_RS16020 hld 2138533..2138613 (-) 81 WP_000046022.1 delta-hemolysin -
  SAMI_RS10945 (SAMI_2016) - 2138903..2139466 (+) 564 WP_001105696.1 accessory gene regulator AgrB -
  SAMI_RS10950 (SAMI_2017) agrD 2139469..2139612 (+) 144 WP_001094921.1 cyclic lactone autoinducer peptide AgrD -
  SAMI_RS10955 agrC 2139642..2140925 (+) 1284 WP_000447888.1 quorum-sensing sensor histidine kinase AgrC -
  SAMI_RS10960 (SAMI_2019) agrA 2140944..2141660 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  SAMI_RS10965 - 2141732..2141841 (+) 110 Protein_2090 hypothetical protein -
  SAMI_RS10970 (SAMI_2020) - 2142029..2142988 (-) 960 WP_001253312.1 carbohydrate kinase family protein -
  SAMI_RS10975 (SAMI_2021) - 2142985..2144469 (-) 1485 WP_000141432.1 sucrose-6-phosphate hydrolase -
  SAMI_RS10980 (SAMI_2022) - 2144618..2145568 (-) 951 WP_000790331.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=67744 SAMI_RS10960 WP_000688492.1 2140944..2141660(+) (agrA) [Staphylococcus aureus strain MI]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=67744 SAMI_RS10960 WP_000688492.1 2140944..2141660(+) (agrA) [Staphylococcus aureus strain MI]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment