Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG595_RS24535 Genome accession   NZ_CP109479
Coordinates   5620884..5622293 (-) Length   469 a.a.
NCBI ID   WP_329275441.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01451     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5615884..5627293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG595_RS24515 (OG595_24500) - 5616563..5617105 (-) 543 WP_329275431.1 SigE family RNA polymerase sigma factor -
  OG595_RS24520 (OG595_24505) - 5617403..5618359 (-) 957 WP_329275433.1 A/G-specific adenine glycosylase -
  OG595_RS24525 (OG595_24510) - 5618715..5619575 (+) 861 WP_329275435.1 hypothetical protein -
  OG595_RS24530 (OG595_24515) disA 5619678..5620802 (-) 1125 WP_329275438.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG595_RS24535 (OG595_24520) radA/sms 5620884..5622293 (-) 1410 WP_329275441.1 DNA repair protein RadA Machinery gene
  OG595_RS24540 (OG595_24525) - 5622511..5624307 (+) 1797 WP_329275444.1 hypothetical protein -
  OG595_RS24545 (OG595_24530) - 5624367..5625161 (-) 795 WP_329283157.1 hypothetical protein -
  OG595_RS24550 (OG595_24535) - 5625317..5626261 (+) 945 WP_329275447.1 Ppx/GppA phosphatase family protein -
  OG595_RS24555 (OG595_24540) - 5626450..5627289 (+) 840 WP_329275449.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49763.97 Da        Isoelectric Point: 8.0042

>NTDB_id=677314 OG595_RS24535 WP_329275441.1 5620884..5622293(-) (radA/sms) [Streptomyces sp. NBC_01451]
MAVRTKTAKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDVRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYITGEESASQVRLRADRIKAIDDHLFLAAETDLAAVL
GHLEAVKPSLLILDSVQTVASPEIDGAAGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVVEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADMGDALRVLPRSRRREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=677314 OG595_RS24535 WP_329275441.1 5620884..5622293(-) (radA/sms) [Streptomyces sp. NBC_01451]
ATGGCTGTTCGTACGAAGACCGCTAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCACCGGGCC
GGGTCACCACCTCCGCGGTCCCCATCGGACAGGTCGACGTCCGCCAGGCCACCGCCCGCAGCACCGGTGTGCCCGAACTG
GACCGCGTACTGGGCGGCGGGCTCGTCCCGGGTGCCGTCGTTCTCGTGGCCGGTGAGCCGGGCGTGGGCAAGTCGACGCT
CCTCCTCGACGTCGCGGCGAAGTCGGCGAGCGACGAGCACCGCACGCTCTACATCACGGGTGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCATCTGTTCCTGGCCGCGGAGACGGACCTCGCGGCGGTGCTG
GGCCACCTGGAAGCCGTGAAACCGTCCCTCCTGATCCTCGACTCCGTCCAGACGGTGGCCTCGCCGGAGATCGACGGCGC
GGCGGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGGGCACTGATCCGCGCCTCCAAGGAGCGCGGCATGTCGACGCTCC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCGCGCCTGCTGGAACACCTGGTGGACGTGGTCCTGTCGTTC
GAGGGCGACCGGCACGCCCGCCTCCGTCTCGTCCGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGGCGCGCCGAACCGGTGCCGG
GGACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTCGTCGTCGAGGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCAGGCGGACGACGTCGGGCCTGGAGACGTCCCGGGTCTCGATGATGCTCGCGGTTCTCGAACAACGGGGCAG
GATCAGCGCGCTCGGAAAGCGGGACATCTATTCGGCGACGGTCGGCGGGGTGAAGCTCTCCGAACCGGCCGCGGACCTCG
CGATCGCCCTCGCGCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCCAAGAACCTGGTCGCGATCGGCGAAGTGGGCCTT
GCGGGCGAGGTCAGACGGGTGACGGGGGTCCAGCGCCGGCTGTCCGAAGCACACCGTCTGGGCTTCACCCACGCCCTCGT
TCCCTCGGACCCCGGCAAGATCCCCGCCGGTATGAAGGTCATCGAAGTCGCCGACATGGGGGACGCGCTCCGAGTGCTTC
CGCGGTCGCGTAGGCGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.588

0.422
  radA Streptococcus mitis SK321

42.384

96.588

0.409
  radA Streptococcus mitis NCTC 12261

42.384

96.588

0.409
  radA Streptococcus pneumoniae TIGR4

42.444

95.949

0.407
  radA Streptococcus pneumoniae R6

42.444

95.949

0.407
  radA Streptococcus pneumoniae Rx1

42.444

95.949

0.407
  radA Streptococcus pneumoniae D39

42.444

95.949

0.407