Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MW696_RS05880 Genome accession   NZ_CP095476
Coordinates   1190855..1192585 (-) Length   576 a.a.
NCBI ID   WP_247072445.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185855..1197585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS05855 (MW696_05855) - 1185980..1186894 (+) 915 WP_247072443.1 class I SAM-dependent methyltransferase -
  MW696_RS05860 (MW696_05860) - 1187035..1187493 (+) 459 WP_156183661.1 hypothetical protein -
  MW696_RS05865 (MW696_05865) - 1187645..1187947 (-) 303 WP_247072444.1 LCI fold-containing protein -
  MW696_RS05870 (MW696_05870) spo0A 1188277..1189077 (-) 801 WP_048353339.1 sporulation transcription factor Spo0A Regulator
  MW696_RS05875 (MW696_05875) spoIVB 1189367..1190683 (-) 1317 WP_048353350.1 SpoIVB peptidase -
  MW696_RS05880 (MW696_05880) recN 1190855..1192585 (-) 1731 WP_247072445.1 DNA repair protein RecN Machinery gene
  MW696_RS05885 (MW696_05885) argR 1192616..1193065 (-) 450 WP_046131874.1 transcriptional regulator ArgR -
  MW696_RS05890 (MW696_05890) - 1193172..1194017 (-) 846 WP_247072446.1 TlyA family RNA methyltransferase -
  MW696_RS05895 (MW696_05895) dxs 1194014..1195915 (-) 1902 WP_048353349.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MW696_RS05900 (MW696_05900) - 1196180..1197070 (-) 891 WP_048353336.1 polyprenyl synthetase family protein -
  MW696_RS05905 (MW696_05905) - 1197060..1197320 (-) 261 WP_048353335.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64499.37 Da        Isoelectric Point: 4.7745

>NTDB_id=677139 MW696_RS05880 WP_247072445.1 1190855..1192585(-) (recN) [Bacillus glycinifermentans strain MGMM1]
MLAELSIKNFAIIEELTISFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEKRAELEGLFLLDEGHPVFDMC
RELGIEASDGMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDDHHLELLDRYAGDEIEKALK
AYQEVYARYMNVMKKVKQLSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLEEERRQISNFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINDGLKKISESVANAYYTLEDSTFQIRNMLDELEYDPARLDFIESRLNEIKQLKRKYGATV
EDIQAYSAKVEEEIDRIQNRDSHLQALKEELESVGQDVAIEAMNVSEIRKAWAKKLAKDIHRELKELYMEKSTFDTEFEI
KTADAREVAPVVNGTPVHLTKQGVDTVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKISEIGRMIAGVEVTDLTKR
HAKELLQQAELVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=677139 MW696_RS05880 WP_247072445.1 1190855..1192585(-) (recN) [Bacillus glycinifermentans strain MGMM1]
TTGTTAGCTGAATTATCGATCAAGAACTTTGCGATTATCGAAGAACTAACGATTTCTTTTGAAAAAGGACTGACGGTTTT
GACCGGTGAAACCGGCGCCGGAAAATCAATCATCATCGATGCGATTTCGCTGCTCGTCGGAGGCAGAGGATCATCAGAAT
TTGTCAGATACGGAGAAAAACGAGCGGAATTGGAAGGGCTCTTTCTGCTGGACGAGGGACATCCGGTTTTTGATATGTGC
AGAGAGCTCGGCATCGAAGCATCAGACGGCATGATCGTGATGAGGCGTGATATCAACGCCAACGGCAAGAGCATCTGCCG
TGTCAACGGAAAGCTCGTAACGATCGCCGCTCTGCGGGAAGTCGGCAGGCTTTTACTCGACATCCACGGTCAGCACGATA
ACCAGCTTTTGATGGAAGACGATCATCACCTTGAGCTTTTGGACCGGTATGCCGGAGATGAAATCGAAAAAGCGCTGAAA
GCATATCAGGAAGTGTACGCCCGCTATATGAACGTCATGAAAAAAGTCAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
TCACAGACTCGACTTGATCCAATTTCAGCTTGACGAAATCGAATCTGCAAATCTCGAGCCGAAAGAGGACGAGCTTTTAG
AAGAAGAGCGCCGGCAGATTTCCAACTTTGAGAAAATATACGAAGCTTTGCAAAATGCCTACAATGCGCTTCGCAATGAG
CAGGCGGGCCTAGATTGGGTCGGCATGGCTTCAAGCGAGCTCGAAAATGTGTCAGGCATCAATGACGGACTGAAGAAAAT
ATCCGAATCCGTCGCAAACGCCTACTATACGCTGGAAGACTCGACGTTTCAAATCAGAAACATGCTCGACGAATTGGAAT
ACGACCCTGCACGCCTCGACTTCATTGAATCCCGCCTGAACGAAATAAAACAGCTGAAGCGGAAATACGGCGCCACAGTG
GAAGATATTCAAGCCTATTCGGCTAAAGTCGAAGAAGAAATCGACCGCATTCAAAACCGGGACAGCCACTTGCAGGCTTT
AAAAGAGGAGCTTGAGTCGGTCGGCCAGGATGTCGCGATCGAAGCGATGAATGTGTCAGAGATCAGAAAAGCATGGGCGA
AAAAACTCGCCAAAGATATTCACCGCGAACTAAAAGAGCTGTACATGGAAAAATCAACGTTCGATACCGAATTTGAGATC
AAAACAGCCGATGCCCGAGAAGTCGCGCCTGTTGTCAACGGAACGCCCGTTCACCTGACAAAGCAAGGCGTTGACACCGT
CCGCTTTTTGATTTCCACCAATACGGGAGAACCGCTGAAATCGTTGTCAAAAGTCGCTTCAGGCGGCGAATTGTCAAGGA
TTATGCTGGCGATGAAAAGCATTTTTTCCGCACAGCAGGACGTCACATCGATCATTTTTGACGAAGTGGATACTGGTGTA
AGCGGAAGGGTGGCGCAGGCGATCGCCGAGAAAATCCACCGCGTATCGATCGGCTCCCAGGTGCTGTGCATCACCCATTT
GCCGCAAGTCGCCGCAATGGCGGACACGCACCTTTTGATTACGAAGCAGTCCAAAGACGGGAGAACGACGACAAGCGTTA
CCCCTTTGTCAAAACAGGAAAAAATATCGGAAATCGGCCGGATGATCGCCGGCGTCGAAGTTACCGATCTGACGAAACGC
CACGCAAAAGAGCTTTTGCAGCAGGCCGAACTCGTCAAAACGACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

80.729

100

0.807