Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MW696_RS01755 Genome accession   NZ_CP095476
Coordinates   343627..344529 (+) Length   300 a.a.
NCBI ID   WP_048354624.1    Uniprot ID   A0A0T6BQQ5
Organism   Bacillus glycinifermentans strain MGMM1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338627..349529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS01735 (MW696_01735) - 339315..340988 (+) 1674 WP_247071564.1 hypothetical protein -
  MW696_RS01740 (MW696_01740) - 340985..341263 (+) 279 WP_048354626.1 FlhB-like flagellar biosynthesis protein -
  MW696_RS01745 (MW696_01745) sucC 341440..342600 (+) 1161 WP_057957553.1 ADP-forming succinate--CoA ligase subunit beta -
  MW696_RS01750 (MW696_01750) sucD 342620..343522 (+) 903 WP_247071566.1 succinate--CoA ligase subunit alpha -
  MW696_RS01755 (MW696_01755) dprA 343627..344529 (+) 903 WP_048354624.1 DNA-processing protein DprA Machinery gene
  MW696_RS01760 (MW696_01760) topA 344735..346810 (+) 2076 WP_057957554.1 type I DNA topoisomerase -
  MW696_RS01765 (MW696_01765) trmFO 346887..348191 (+) 1305 WP_247071568.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MW696_RS01770 (MW696_01770) xerC 348258..349172 (+) 915 WP_048407238.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33005.13 Da        Isoelectric Point: 9.8884

>NTDB_id=677132 MW696_RS01755 WP_048354624.1 343627..344529(+) (dprA) [Bacillus glycinifermentans strain MGMM1]
MNDKCGLLILLRLYGNLSPSLLFKWWKEDPSLSLTEEKSHPLKKLSSKSIDVGAIRKLAEKELPNVKRIIASYRENGISV
IAISSPEYPPLLKTIHDPPPVLFLKGNKTLLYEKRLIGIVGTRNPSAYGENAASYFARALSKKEWTIVSGLAKGIDGHAH
RETIRSKGRTIGVIAGGFNCIYPRENRLLAQQMAESHLLVSEHLPDAKPQKWHFPLRNRLISGLTEGVVVIQGKEKSGSL
ITAYQALEQGREVFAVPGSIFDENSKGPAGLIQEGAKLVASVDDILGELSGFQARYTESV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=677132 MW696_RS01755 WP_048354624.1 343627..344529(+) (dprA) [Bacillus glycinifermentans strain MGMM1]
ATGAATGACAAGTGCGGGCTTTTGATATTGCTTCGCCTGTACGGCAACCTTTCCCCTTCCCTCTTATTTAAATGGTGGAA
GGAAGACCCGTCCTTATCGCTTACGGAAGAAAAGAGCCACCCTCTAAAAAAGCTGTCATCGAAAAGCATAGACGTCGGAG
CCATCCGAAAGCTGGCCGAAAAAGAGCTGCCGAACGTAAAGCGGATCATCGCAAGCTACCGCGAAAACGGAATTAGCGTG
ATCGCGATTTCGTCCCCTGAATATCCACCCCTGCTGAAAACGATCCACGACCCGCCTCCCGTTCTTTTTCTCAAAGGAAA
CAAAACCCTTCTTTATGAAAAAAGGCTCATCGGTATTGTGGGAACCCGAAATCCTTCAGCGTACGGCGAAAATGCGGCTT
CCTACTTTGCCAGAGCGCTCAGCAAAAAAGAATGGACAATCGTCAGCGGGCTTGCCAAAGGGATCGACGGTCACGCCCAT
CGGGAGACGATCCGTTCAAAAGGAAGAACGATCGGCGTCATCGCCGGCGGATTCAACTGCATATATCCTCGTGAAAACCG
TCTGCTTGCCCAACAGATGGCCGAAAGCCATCTTCTGGTGTCAGAGCACCTTCCCGATGCAAAACCTCAAAAATGGCACT
TTCCGCTGCGAAATCGGCTGATCAGCGGCTTAACAGAAGGAGTCGTCGTCATTCAGGGCAAGGAAAAAAGCGGCTCGCTC
ATTACCGCCTACCAGGCGCTCGAACAAGGCAGGGAAGTATTTGCGGTGCCGGGTTCAATATTTGACGAAAATTCAAAAGG
ACCGGCCGGGCTGATCCAGGAAGGAGCGAAACTCGTCGCAAGCGTAGACGATATTCTCGGTGAGCTTTCGGGATTTCAGG
CTCGTTATACGGAATCCGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6BQQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.718

99.333

0.573
  dprA Legionella pneumophila strain ERS1305867

40.328

100

0.41
  dprA Lactococcus lactis subsp. cremoris KW2

39.643

93.333

0.37