Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG488_RS12125 Genome accession   NZ_CP109473
Coordinates   2721174..2722250 (-) Length   358 a.a.
NCBI ID   WP_329228639.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01460     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2716174..2727250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG488_RS12115 (OG488_12110) rcrP 2717473..2719206 (+) 1734 WP_329228636.1 ABC transporter ATP-binding protein Regulator
  OG488_RS12120 (OG488_12115) - 2719206..2721128 (+) 1923 WP_329228637.1 ABC transporter ATP-binding protein -
  OG488_RS12125 (OG488_12120) rpoS 2721174..2722250 (-) 1077 WP_329228639.1 RNA polymerase sigma factor Regulator
  OG488_RS12130 (OG488_12125) dnaG 2722562..2724469 (-) 1908 WP_329228641.1 DNA primase -
  OG488_RS12135 (OG488_12130) - 2724566..2725825 (-) 1260 WP_329228643.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 40382.14 Da        Isoelectric Point: 5.8380

>NTDB_id=677047 OG488_RS12125 WP_329228639.1 2721174..2722250(-) (rpoS) [Streptomyces sp. NBC_01460]
MQTRTVPITTELVPAIPAQNRAARHPETAGTPEPVLEEPVERPELPEPRSRPEAGGPSSDLFRQYLREIGRIPLLSAAEE
VDLARRVEAGLFAEERLARTPDPDSRLAFDLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIR
AVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAAQLDLTPERV
GEVLRLAQEPVSLHAPVGEEDDVAFGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLDDGRPRTLE
EIGRIFGVTRERIRQIESKTLDKLRAHAFADQLRGYLD

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=677047 OG488_RS12125 WP_329228639.1 2721174..2722250(-) (rpoS) [Streptomyces sp. NBC_01460]
GTGCAGACCCGGACCGTGCCGATCACGACCGAGCTCGTCCCGGCGATTCCCGCGCAGAACCGGGCCGCACGTCACCCGGA
GACGGCGGGCACGCCCGAACCGGTGCTGGAGGAACCGGTGGAGCGCCCCGAGCTCCCCGAGCCGCGCAGCCGCCCGGAGG
CGGGCGGCCCGTCCTCCGACCTCTTCCGCCAGTACTTACGCGAGATCGGGCGGATACCGCTGCTGAGCGCCGCGGAGGAG
GTGGACCTCGCCCGCCGCGTCGAAGCGGGACTCTTCGCCGAGGAACGGCTCGCCCGCACCCCCGACCCGGACTCCCGGCT
CGCCTTCGACCTGGACCGGCTCGTGGTCCTGGGGCGGATGGCGAAACGCCGGCTCATCGAGGCCAACCTCCGCCTCGTCG
TCTCCGTGGCCAAGCGCTACGTCGGCCGGGGCCTCACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGACTGATCAGG
GCGGTCGAGAAGTTCGACTACGCGCGGGGCTACAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCCATGTCCCG
CGCGCTGGCCGACCAGGCCAGGACCATCAGGGTCCCGGTGCACGTCGTCGAGCTGATCAACCGGGTCGTGCGCGTCCAGC
GCCGCATGCTCCAGGAACGCGGCTACGAACCCACCGCCGAGGAGGTCGCCGCCCAGCTCGACCTCACGCCCGAACGCGTC
GGCGAGGTGCTGCGCCTCGCCCAGGAACCCGTCTCGCTGCACGCCCCTGTCGGCGAGGAGGACGACGTCGCCTTCGGTGA
CCTCATCGAGGACGGCGACGCCGCCTCACCGGTCGAGTCCGCGGCCTTCCTCCTCCTGCGCGAACACCTGGAGGCGGTGC
TCTCCACCCTCGGGGAGCGGGAGAGGAAGGTCGTCCAGCTCCGCTACGGGCTGGACGACGGGCGCCCCCGCACGCTGGAG
GAGATCGGGAGGATCTTCGGCGTGACCCGCGAGCGCATCCGCCAGATCGAGTCCAAGACGCTCGACAAGCTGCGGGCCCA
CGCCTTCGCCGACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(293-346)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(60-93)

Sigma-70 region 2 (Sigma70_r2)

(125-194)

Sigma-70 region 3 (Sigma70_r3)

(204-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.434

82.961

0.36