Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG488_RS12115 Genome accession   NZ_CP109473
Coordinates   2717473..2719206 (+) Length   577 a.a.
NCBI ID   WP_329228636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01460     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2712473..2724206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG488_RS12080 (OG488_12075) - 2713070..2713936 (+) 867 WP_329228630.1 fumarylacetoacetate hydrolase family protein -
  OG488_RS12085 (OG488_12080) - 2714036..2714485 (+) 450 WP_329228632.1 MarR family transcriptional regulator -
  OG488_RS12105 (OG488_12100) - 2715542..2715844 (+) 303 WP_329238592.1 YtxH domain-containing protein -
  OG488_RS12110 (OG488_12105) - 2715911..2717359 (+) 1449 WP_329228634.1 FGGY family carbohydrate kinase -
  OG488_RS12115 (OG488_12110) rcrP 2717473..2719206 (+) 1734 WP_329228636.1 ABC transporter ATP-binding protein Regulator
  OG488_RS12120 (OG488_12115) - 2719206..2721128 (+) 1923 WP_329228637.1 ABC transporter ATP-binding protein -
  OG488_RS12125 (OG488_12120) rpoS 2721174..2722250 (-) 1077 WP_329228639.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62544.62 Da        Isoelectric Point: 5.3681

>NTDB_id=677046 OG488_RS12115 WP_329228636.1 2717473..2719206(+) (rcrP) [Streptomyces sp. NBC_01460]
MLIKLLRTYLGPYRQPIMLLVLFQLLQTCASLYLPSLNADIIDNGVVRGDTGYILQFGAVMIAVSVIQIVCNIGAVYYGA
RTASALGRDVRASVFGQVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGISVSLIVRRMRPLFRTMQVRLDTVNRVLREQITGNRVIRAFIRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKLLTHGHLEIRGAEFRYPGAEEPVLRSVDLAARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGEVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQKPEIYLFDDSFSALDYATDAALRGALSHETSGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHGELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=677046 OG488_RS12115 WP_329228636.1 2717473..2719206(+) (rcrP) [Streptomyces sp. NBC_01460]
GTGCTCATAAAACTCCTGCGGACCTATCTGGGTCCGTACAGACAGCCCATCATGCTGCTGGTGCTGTTCCAGCTCCTGCA
GACCTGCGCGAGCCTCTACCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTGCGGGGGGACACGGGTTACA
TCCTGCAGTTCGGCGCGGTGATGATCGCGGTCAGCGTCATCCAGATCGTCTGCAACATCGGGGCCGTCTACTACGGCGCC
CGGACCGCCTCCGCGCTCGGGCGCGACGTGCGGGCGTCGGTCTTCGGCCAGGTGCAGTCGTTCTCCGCGCGCGAGGTGGG
ACGGTTCGGGGCTCCTTCGCTGATCACCCGGACGACCAATGACGTGCAGCAGGTCCAGATGCTCGTCCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCCATCATGTGCGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCCCTGTCGGCGGTG
CTGCTGGCCGTGCTGCCCGTGCTCGGGATCTCGGTGAGCCTCATCGTGAGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACACGGTGAACCGGGTACTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCATCCGTGACG
GCTACGAGGAGGAACGCTTCCGCGGCGCCAACACGGAGCTGACGGACGTCGCCCTGTCGACGGGCCGGCTGATGGCCCTC
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTCATGGCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTCCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCCACCGCCCCGGTCACGAAGCTGCTCACACACGGCCACCTGGAGATACGGGGCGCGGAGTTCCGTTACCCGGGCGCCGA
GGAGCCGGTGCTGCGTTCCGTCGATCTCGCGGCTCGGCCCGGGGAGACGACCGCGATCATCGGCTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTGCCGCGGCTGTTCGACGCGACGGACGGCGAGGTGCTCGTCGACGGTACGGACGTGAGG
ACGCTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCGACCGACGAAGAACTGTGGCACGCCCTGGAGGTGGCGCAGGCGAAGGAGTTCG
TGGAGCGGCTGGAGCACGGCCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGTGGCCAGCGGCAGCGGCTC
GCGATCGCGAGGACGCTGGTGCAGAAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGCGCCCTGTCCCACGAGACGTCGGGGGCGACCGTGGTGATCGTGGCACAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCAGGGTCGTCGGGACGGGCACGCACGGCGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.893

100

0.412