Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG707_RS16980 Genome accession   NZ_CP109467
Coordinates   3601188..3602600 (+) Length   470 a.a.
NCBI ID   WP_329119068.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3596188..3607600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG707_RS16960 (OG707_16965) - 3596780..3597598 (-) 819 WP_329119060.1 sugar phosphate isomerase/epimerase -
  OG707_RS16965 (OG707_16970) - 3597622..3598554 (-) 933 WP_329119062.1 Ppx/GppA phosphatase family protein -
  OG707_RS16970 (OG707_16975) - 3598595..3599398 (+) 804 WP_329119064.1 hypothetical protein -
  OG707_RS16975 (OG707_16980) - 3599395..3601038 (-) 1644 WP_329119066.1 hypothetical protein -
  OG707_RS16980 (OG707_16985) radA/sms 3601188..3602600 (+) 1413 WP_329119068.1 DNA repair protein RadA Machinery gene
  OG707_RS16985 (OG707_16990) disA 3602645..3603772 (+) 1128 WP_329119070.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG707_RS16990 (OG707_16995) - 3603831..3604643 (-) 813 WP_329119072.1 hypothetical protein -
  OG707_RS16995 (OG707_17000) - 3604808..3605437 (+) 630 WP_329119074.1 phosphatase PAP2 family protein -
  OG707_RS17000 (OG707_17005) - 3605454..3606383 (+) 930 WP_329119076.1 A/G-specific adenine glycosylase -
  OG707_RS17005 (OG707_17010) - 3606525..3607094 (+) 570 WP_329119078.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49510.60 Da        Isoelectric Point: 7.4625

>NTDB_id=676877 OG707_RS16980 WP_329119068.1 3601188..3602600(+) (radA/sms) [Streptomyces sp. NBC_01465]
MAARTKSTKDRPSYRCTECGYTTAKWLGRCHECQAWGTVEEIGGAPAVRTTAAGRVSTAAVPIGQVDTRQATARSTGVDE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIGALSDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAMALALASAASDVPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVIEVGDMGDALRVLPRRSRAEAPREDDTRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=676877 OG707_RS16980 WP_329119068.1 3601188..3602600(+) (radA/sms) [Streptomyces sp. NBC_01465]
ATGGCAGCTCGTACGAAGTCCACCAAAGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTACACGACGGCCAAATGGCT
CGGTCGCTGCCACGAGTGCCAGGCCTGGGGGACGGTCGAGGAGATCGGCGGCGCCCCCGCGGTCCGCACCACGGCGGCCG
GCCGGGTCAGCACGGCGGCCGTGCCCATCGGACAGGTCGACACCCGTCAGGCGACCGCCCGCTCGACCGGCGTCGACGAA
CTGGACCGGGTGCTGGGCGGCGGTCTCGTGCCCGGGGCCGTCGTGCTGCTCGCGGGCGAGCCCGGGGTGGGCAAGTCGAC
GCTGCTCCTCGACGTGGCCGCGAAGGCGGCGAGCGACGACCACCGCACGCTGTACGTGACCGCGGAGGAGTCCGCGAGCC
AGGTCAGACTGCGCGCCGACCGCATCGGCGCGCTCAGCGACCATCTGTACCTGGCCGCCGAGACCGATCTGTCCGCAGTG
CTGGGGCACCTGGACGCGGTGAAGCCCTCGCTGCTGGTCCTGGACTCCGTGCAGACCGTGGCCTCCCCCGAGCTCGACGG
GGCGCCGGGCGGAATGGCGCAGGTCAGGGAGGTGGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGACGC
TCCTGGTCGGGCACGTCACCAAGGACGGTGCGATCGCGGGGCCGCGGCTCCTGGAGCATCTGGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCATGCACGGCTGCGGCTGGTGCGGGGTGTCAAGAACCGTTACGGAGCGACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGGATCACGGGACTCGCCGACCCCAGCGGACTGTTCCTGACCCGGCGCGACGAGCCCGTCC
CCGGTACGTGTCTGACGGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAAGTGCAGGCGCTCACCGTCGACTCGCAG
ATCCCCTCGCCGCGCAGGACCACTTCGGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCGCCCTTGGCAAGCGCGACATCTACACGGCGACGGTGGGCGGGGTGAAGCTCACCGAGCCCGCCGCGGACC
TCGCGATGGCGCTCGCGCTGGCATCCGCCGCCAGTGACGTACCGCTGCCGAAGAACCTGGTCGCGATCGGCGAAGTCGGG
CTTGCGGGCGAGGTCAGGAGGGTGACGGGGGTCCAGCGGAGGCTGGCCGAGGCGCACCGTCTGGGCTTCACGCACGCCCT
TGTTCCGACCGATCCGGGGAAGGTCCCTGCGGGCATGAAGGTCATCGAAGTGGGCGACATGGGGGACGCGCTGCGTGTGC
TTCCGCGACGGTCTCGAGCAGAGGCGCCCCGGGAGGACGACACGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(82-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.17

0.417
  radA Streptococcus pneumoniae Rx1

42.035

96.17

0.404
  radA Streptococcus pneumoniae D39

42.035

96.17

0.404
  radA Streptococcus pneumoniae R6

42.035

96.17

0.404
  radA Streptococcus pneumoniae TIGR4

42.035

96.17

0.404
  radA Streptococcus mitis SK321

43.224

91.064

0.394
  radA Streptococcus mitis NCTC 12261

43.224

91.064

0.394