Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MWH19_RS08975 Genome accession   NZ_CP095406
Coordinates   1840651..1841247 (+) Length   198 a.a.
NCBI ID   WP_012490752.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain GM-080     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1835651..1846247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWH19_RS08955 (MWH19_08940) gyrA 1836152..1838773 (+) 2622 WP_003584054.1 DNA gyrase subunit A -
  MWH19_RS08960 (MWH19_08945) deoC 1838878..1839582 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  MWH19_RS08965 (MWH19_08950) ssb 1839765..1840196 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  MWH19_RS08970 (MWH19_08955) rpsF 1840324..1840620 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  MWH19_RS08975 (MWH19_08960) ssb 1840651..1841247 (+) 597 WP_012490752.1 single-stranded DNA-binding protein Machinery gene
  MWH19_RS08980 (MWH19_08965) rpsR 1841334..1841570 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  MWH19_RS08985 (MWH19_08970) - 1841966..1843591 (+) 1626 WP_014566347.1 polysaccharide biosynthesis protein -
  MWH19_RS08990 (MWH19_08975) - 1844453..1845931 (+) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21112.84 Da        Isoelectric Point: 4.9056

>NTDB_id=676729 MWH19_RS08975 WP_012490752.1 1840651..1841247(+) (ssb) [Lacticaseibacillus paracasei strain GM-080]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEAANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=676729 MWH19_RS08975 WP_012490752.1 1840651..1841247(+) (ssb) [Lacticaseibacillus paracasei strain GM-080]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAAGCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.505

100

0.505