Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG285_RS14335 Genome accession   NZ_CP109450
Coordinates   3286459..3287856 (+) Length   465 a.a.
NCBI ID   WP_356835591.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01471     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3281459..3292856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG285_RS14315 (OG285_14300) - 3281631..3282449 (-) 819 WP_371791147.1 sugar phosphate isomerase/epimerase family protein -
  OG285_RS14320 (OG285_14305) - 3282538..3283470 (-) 933 WP_356835598.1 Ppx/GppA phosphatase family protein -
  OG285_RS14325 (OG285_14310) - 3283548..3284348 (+) 801 WP_371791148.1 hypothetical protein -
  OG285_RS14330 (OG285_14315) - 3284556..3286274 (-) 1719 WP_371791149.1 hypothetical protein -
  OG285_RS14335 (OG285_14320) radA/sms 3286459..3287856 (+) 1398 WP_356835591.1 DNA repair protein RadA Machinery gene
  OG285_RS14340 (OG285_14325) disA 3287913..3289037 (+) 1125 WP_356835589.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG285_RS14345 (OG285_14330) - 3289167..3290006 (-) 840 WP_371793530.1 hypothetical protein -
  OG285_RS14350 (OG285_14335) - 3290190..3290798 (+) 609 WP_356835585.1 phosphatase PAP2 family protein -
  OG285_RS14355 (OG285_14340) - 3290815..3291804 (+) 990 WP_356835583.1 A/G-specific adenine glycosylase -
  OG285_RS14360 (OG285_14345) - 3291991..3292542 (+) 552 WP_266854649.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48760.80 Da        Isoelectric Point: 7.7220

>NTDB_id=676670 OG285_RS14335 WP_356835591.1 3286459..3287856(+) (radA/sms) [Streptomyces sp. NBC_01471]
MATRAKTRERPSYRCTECGYTTAKWLGRCPECQTWGTVEEQGGGPAVRTTAAGPVSSAAVPIGQVDSRTATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGSDHRTLYVTAEESASQVRLRADRIHAINDNLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVIEVADMGDALRVLPRRSRARAPQDE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=676670 OG285_RS14335 WP_356835591.1 3286459..3287856(+) (radA/sms) [Streptomyces sp. NBC_01471]
ATGGCCACCCGTGCGAAGACCAGAGAACGGCCGTCCTACCGCTGCACCGAATGCGGGTACACGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGACGTGGGGGACGGTCGAGGAGCAGGGCGGCGGGCCCGCCGTGCGGACGACCGCCGCCGGGC
CGGTCAGCAGCGCCGCCGTCCCCATCGGCCAGGTCGACAGCCGGACGGCGACGGCGCGTTCGACCGGGGTCGCCGAGCTG
GACCGGGTGCTGGGCGGCGGTCTGGTGCCCGGCGCTGTGGTGCTCCTCGCAGGTGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTCGCGGCGAAGGCGGCGGGCTCCGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCCGCGAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAACGACAACCTCTACCTGGCCGCCGAGACGGATCTCGCCGCGGTGCTC
GGCCATCTCGACGCGGTGAAGCCGTCCCTGCTGGTGCTGGACTCCGTACAGACGGTGGCCTCTCCCGAACTGGACGGCGC
GCCGGGCGGCATGGCGCAGGTGCGCGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACCCTCC
TTGTCGGGCACGTCACGAAGGACGGTGCCATTGCCGGGCCCCGGCTCCTGGAGCACCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACAGATACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGTCTCGCCGATCCGAGTGGGCTGTTCCTGACACGCCGTGACGAACCGGTGCCCG
GGACCTGTCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATT
CCTTCTCCCCGGCGCACCACTTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTCGAACAGCGCGGCAG
GATCAGCGCGCTCGGCAAACGCGACATCTACACGGCGACGGTCGGCGGGGTGAAGCTCACCGAACCGGCCGCCGACCTGG
CCGTCGCGCTGGCCCTGGCCTCCGCCGCCAGCGATGTCCCGCTCCCGAAGAACCTGGTGGCCATCGGTGAAGTGGGCCTC
GCGGGCGAGGTCAGAAGGGTCACCGGCGTCCAGCGCAGGCTCGCCGAGGCGCACCGTCTCGGCTTCACCCACGCCCTCGT
CCCGACCGATCCCGGGAAGGTCCCCGCGGGCATGAAGGTCATCGAAGTGGCGGACATGGGGGACGCGCTGCGGGTCCTCC
CGCGCCGTTCAAGGGCCCGCGCGCCTCAGGACGAGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

AAA domain (AAA_25)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.077

97.849

0.422
  radA Streptococcus mitis SK321

41.814

97.204

0.406
  radA Streptococcus mitis NCTC 12261

41.814

97.204

0.406
  radA Streptococcus pneumoniae TIGR4

41.871

96.559

0.404
  radA Streptococcus pneumoniae R6

41.871

96.559

0.404
  radA Streptococcus pneumoniae Rx1

41.871

96.559

0.404
  radA Streptococcus pneumoniae D39

41.871

96.559

0.404