Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MU539_RS00050 Genome accession   NZ_CP095384
Coordinates   11081..11671 (+) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus strain VHProbi M14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6081..16671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU539_RS00030 (MU539_00030) gyrA 6697..9309 (+) 2613 WP_033572074.1 DNA gyrase subunit A -
  MU539_RS00035 (MU539_00035) deoC 9383..10087 (-) 705 WP_033572075.1 deoxyribose-phosphate aldolase -
  MU539_RS00040 (MU539_00040) ssb 10197..10628 (+) 432 WP_005690380.1 single-stranded DNA-binding protein -
  MU539_RS00045 (MU539_00045) rpsF 10755..11051 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  MU539_RS00050 (MU539_00050) ssb 11081..11671 (+) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  MU539_RS00055 (MU539_00055) rpsR 11762..11998 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  MU539_RS00060 (MU539_00060) - 12186..12692 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  MU539_RS00065 (MU539_00065) - 13003..14481 (+) 1479 WP_033572077.1 cytochrome ubiquinol oxidase subunit I -
  MU539_RS00070 (MU539_00070) cydB 14474..15493 (+) 1020 WP_257586089.1 cytochrome d ubiquinol oxidase subunit II -
  MU539_RS00075 (MU539_00075) - 15533..15727 (+) 195 WP_005707490.1 hypothetical protein -
  MU539_RS00080 (MU539_00080) - 15806..16231 (-) 426 WP_033572078.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=676612 MU539_RS00050 WP_005709832.1 11081..11671(+) (ssb) [Lacticaseibacillus rhamnosus strain VHProbi M14]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=676612 MU539_RS00050 WP_005709832.1 11081..11671(+) (ssb) [Lacticaseibacillus rhamnosus strain VHProbi M14]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAAGGATCATTGGTTGGTGTTGAGGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGACAAAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505