Detailed information NTG0676539

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG552_RS33085
• Genome accession: NZ_CP109446
• Coordinates: 7613756..7615030 (-)
• Length: 424 a.a.
• NCBI ID: WP_329139309.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01476
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 7608756..7620030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG552_RS33070 (OG552_33055)	-	7611573..7612451 (+)	879	WP_329139305.1	DNA-3-methyladenine glycosylase 2 family protein	-
OG552_RS33075 (OG552_33060)	-	7612514..7613308 (-)	795	WP_329141325.1	SDR family oxidoreductase	-
OG552_RS33080 (OG552_33065)	-	7613552..7613743 (+)	192	WP_329139307.1	DUF6381 family protein	-
OG552_RS33085 (OG552_33070)	clpX	7613756..7615030 (-)	1275	WP_329139309.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG552_RS33090 (OG552_33075)	-	7615208..7616371 (+)	1164	WP_329139312.1	TetR/AcrR family transcriptional regulator	-
OG552_RS33105 (OG552_33090)	-	7616633..7617187 (+)	555	WP_329139314.1	hypothetical protein	-
OG552_RS33110 (OG552_33095)	-	7617912..7618406 (+)	495	WP_329139316.1	hypothetical protein	-
OG552_RS33115 (OG552_33100)	-	7618828..7618992 (+)	165	WP_329139318.1	hypothetical protein	-
OG552_RS33120 (OG552_33105)	-	7619266..7619535 (+)	270	Protein_6535	DUF402 domain-containing protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46155.86 Da
• Isoelectric Point: 5.2325

>NTDB_id=676539 OG552_RS33085 WP_329139309.1 7613756..7615030(-) (clpX) [Streptomyces sp. NBC_01476]
MARTGEDSHLLTCSFCAKTQKQVRKLIAGPLGLYICDECVELCNELIEEELGGPDGTPLEELPKPAEIHRFLDQYVIGQE
AAKRSLAVAVHNHYKRVRAAGREDDPVEVAKSNVLLLGPTGCGKTYLAQTLARMLKVPFAIVDATALTEAGYVGEDVENI
LLKLLQAADHDVRRAERGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIRIDTT
NILFIVAGAFAGLERIVGDRTGSGGMGFGAEVQARNAAPRGDVFAQVMPADLITYGLIPEFIGRLPVLARVTALDEAALL
STLTEPRNALAKQYQRLFALDGVELDFTPGALAAIVDSTVLRGTGARGLRAIVEHVLRPIMYDIPDRTDVTRVVVDEDTV
RENLSPMLVTPQRPAYEPRQDRTA

Nucleotide

• Length: 1275 bp

>NTDB_id=676539 OG552_RS33085 WP_329139309.1 7613756..7615030(-) (clpX) [Streptomyces sp. NBC_01476]
ATGGCACGCACCGGCGAGGACAGTCACCTGCTCACGTGCTCCTTCTGCGCCAAGACCCAGAAACAGGTCCGCAAGCTCAT
CGCGGGGCCCCTCGGCCTGTACATCTGCGACGAATGCGTCGAGCTCTGCAACGAGTTGATCGAGGAGGAGCTGGGCGGTC
CCGACGGCACACCGCTGGAGGAGCTGCCGAAGCCGGCCGAGATCCACCGGTTCCTCGACCAGTACGTGATCGGGCAGGAG
GCGGCGAAACGCTCGCTCGCGGTGGCGGTCCACAACCACTACAAGCGGGTCCGGGCGGCCGGCCGCGAGGACGACCCGGT
GGAGGTCGCCAAGTCCAATGTGCTGCTGCTCGGCCCCACCGGCTGCGGCAAGACGTATCTCGCCCAGACGCTGGCCAGGA
TGCTGAAGGTGCCGTTCGCGATCGTGGACGCGACCGCGCTCACCGAGGCCGGATACGTCGGCGAGGACGTCGAGAACATC
CTGCTGAAGCTGCTCCAGGCCGCCGACCACGACGTGCGGCGGGCGGAGCGGGGCATCGTCTACATCGACGAGATCGACAA
GATCTCCCGCAAGAGCGAGAACCCCTCCATCACCCGGGACGTCTCCGGCGAGGGTGTGCAGCAGGCACTGCTGAAGATCC
TGGAGGGCACGACCGCGTCCGTGCCACCGCAGGGCGGGCGGAAGCACCCGCACCAGGAGTTCATCCGGATCGACACGACG
AACATCCTCTTCATCGTGGCCGGCGCCTTCGCCGGTCTGGAGCGGATCGTCGGCGACCGGACCGGCAGCGGCGGCATGGG
CTTCGGGGCGGAGGTCCAGGCCAGGAACGCGGCTCCGCGGGGCGATGTCTTCGCGCAGGTCATGCCGGCCGACCTGATCA
CCTACGGGCTCATCCCGGAGTTCATCGGCCGGCTGCCGGTGCTCGCCCGGGTCACCGCCCTTGACGAGGCGGCGCTGCTG
AGCACGCTCACCGAGCCGCGCAACGCGCTGGCCAAGCAGTATCAGCGGCTCTTCGCGCTGGACGGTGTCGAACTCGACTT
CACCCCGGGGGCGCTCGCGGCCATCGTGGACAGCACGGTGCTCCGCGGGACGGGCGCGCGGGGGCTGCGGGCGATCGTGG
AGCACGTGCTGCGGCCGATCATGTACGACATCCCCGACCGTACCGACGTGACGCGCGTGGTCGTCGACGAGGACACGGTC
CGCGAGAACCTGAGCCCGATGCTCGTCACCCCGCAGCGGCCGGCCTACGAACCGCGTCAGGACAGGACCGCCTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-49)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-384)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.148	94.104	0.557
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.861	95.047	0.493