Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA86_RS29735 Genome accession   NZ_CP109445
Coordinates   6991855..6992502 (+) Length   215 a.a.
NCBI ID   WP_329180173.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01477     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6986855..6997502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA86_RS29715 (OHA86_29765) - 6987509..6988393 (-) 885 WP_329180167.1 transglycosylase SLT domain-containing protein -
  OHA86_RS29720 (OHA86_29770) - 6988646..6989665 (-) 1020 WP_329182605.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHA86_RS29725 (OHA86_29775) - 6989752..6990486 (-) 735 WP_329180169.1 SDR family oxidoreductase -
  OHA86_RS29730 (OHA86_29780) - 6990711..6991862 (+) 1152 WP_329180171.1 GAF domain-containing sensor histidine kinase -
  OHA86_RS29735 (OHA86_29785) vraR 6991855..6992502 (+) 648 WP_329180173.1 response regulator transcription factor Regulator
  OHA86_RS29740 (OHA86_29790) - 6992637..6993428 (-) 792 WP_329180176.1 hypothetical protein -
  OHA86_RS29745 (OHA86_29795) - 6993551..6994342 (+) 792 WP_329182606.1 ABC transporter ATP-binding protein -
  OHA86_RS29750 (OHA86_29800) - 6994434..6994856 (+) 423 WP_329180177.1 NfeD family protein -
  OHA86_RS29755 (OHA86_29805) - 6994985..6995962 (+) 978 WP_329180178.1 SPFH domain-containing protein -
  OHA86_RS29760 (OHA86_29810) - 6996075..6996842 (+) 768 WP_329180180.1 sulfite exporter TauE/SafE family protein -
  OHA86_RS29765 (OHA86_29815) - 6996924..6997427 (-) 504 WP_329180181.1 HNH endonuclease -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23027.27 Da        Isoelectric Point: 5.7152

>NTDB_id=676460 OHA86_RS29735 WP_329180173.1 6991855..6992502(+) (vraR) [Streptomyces sp. NBC_01477]
MADKVIRVLLVDDHQVVRRGLRTFLEVQGDIEVVGEAADGQEGAARAEELRPDVILMDVKMPGTDGIEALRLLRDAQNTA
RVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPVALADAIRSVHAGHVLLQPEVAGALLSQDQAGGSGQGRGNALTERERE
VLTLIADGRSNREIARALVLSEKTVKTHVSNVLMKLDVADRTQAALWAVRNGVGG

Nucleotide


Download         Length: 648 bp        

>NTDB_id=676460 OHA86_RS29735 WP_329180173.1 6991855..6992502(+) (vraR) [Streptomyces sp. NBC_01477]
GTGGCTGACAAAGTGATCCGTGTCCTGCTGGTGGACGACCACCAGGTCGTACGCCGTGGCCTGCGTACGTTCCTGGAGGT
GCAGGGCGACATCGAGGTGGTCGGCGAGGCCGCCGACGGCCAGGAGGGCGCCGCCCGCGCCGAGGAGCTGCGGCCCGACG
TCATCCTCATGGACGTCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGGCTGCTGCGCGACGCGCAGAACACCGCC
CGGGTGCTGGTCGTCACCAGCTTCACCGAGCAGCGCACCGTCGTGCCCGCGCTGCGGGCCGGCGCCGCGGGCTACGTCTA
CAAGGACATCGACCCGGTCGCGCTCGCCGACGCCATCCGCTCGGTGCACGCCGGGCACGTACTGCTCCAGCCCGAGGTGG
CCGGCGCGCTGCTCTCCCAGGACCAGGCCGGCGGCTCGGGCCAGGGCCGCGGCAACGCGCTGACCGAACGCGAACGCGAA
GTGCTCACCCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTGGTGCTGTCGGAGAAGACGGTGAAGAC
CCACGTCTCGAACGTCCTGATGAAGCTGGACGTCGCCGACCGCACCCAGGCCGCGCTGTGGGCGGTACGCAACGGCGTCG
GCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.673

96.744

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.386