Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   MRO11_RS11490 Genome accession   NZ_CP095336
Coordinates   2535611..2536240 (+) Length   209 a.a.
NCBI ID   WP_110167828.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2530611..2541240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS11465 (MRO11_11420) panC 2530983..2531864 (+) 882 WP_154170174.1 pantoate--beta-alanine ligase -
  MRO11_RS11470 (MRO11_11425) - 2531991..2532761 (-) 771 WP_004394238.1 ABC transporter permease -
  MRO11_RS11475 (MRO11_11430) - 2532761..2533684 (-) 924 WP_154170172.1 ABC transporter ATP-binding protein -
  MRO11_RS11480 (MRO11_11435) can 2533948..2534616 (+) 669 WP_004394240.1 carbonate dehydratase -
  MRO11_RS11485 (MRO11_11440) hpt 2534694..2535224 (-) 531 WP_004394241.1 hypoxanthine phosphoribosyltransferase -
  MRO11_RS11490 (MRO11_11445) opaR 2535611..2536240 (+) 630 WP_110167828.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  MRO11_RS11495 (MRO11_11450) lpdA 2536345..2537772 (-) 1428 WP_004394244.1 dihydrolipoyl dehydrogenase -
  MRO11_RS11500 (MRO11_11455) aceF 2538039..2539925 (-) 1887 WP_342639203.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23977.41 Da        Isoelectric Point: 6.6008

>NTDB_id=676439 MRO11_RS11490 WP_110167828.1 2535611..2536240(+) (opaR) [Vibrio metschnikovii strain 19GA03SH07]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVREFSNFL
TDHIDLDLHAKQNMHNIASGMVSLAIDDCHWLKVWFEWSASTRDEVWPLFMSSNRTNQLLVKNVFSKAIERSEVCSKHNP
EDLATLFHGICYSLFVQANRARDEADMQKLVNNYLNMLCIYQGDRAVAI

Nucleotide


Download         Length: 630 bp        

>NTDB_id=676439 MRO11_RS11490 WP_110167828.1 2535611..2536240(+) (opaR) [Vibrio metschnikovii strain 19GA03SH07]
ATGGACGCATCTATTGAGAAACGCCCTAGAACAAGGCTATCTCCACAAAAACGTAAACAGCAACTCATGGAAATCGCGCT
AGAAGTCTTCGCGAAACGAGGTATTGGTCGTGGCGGCCATGCTGACATTGCTGAGATTGCTCAGGTCTCAGTAGCCACGG
TATTCAATTACTTCCCGACCCGTGAAGATCTCGTCGATGACGTTCTCACTTTTGTGGTGCGTGAGTTCTCTAATTTCTTA
ACTGACCATATCGATCTCGATTTGCATGCAAAGCAAAATATGCACAATATCGCGTCGGGTATGGTGAGTTTGGCTATCGA
CGATTGTCACTGGTTAAAAGTGTGGTTTGAGTGGAGCGCCTCTACGCGTGATGAAGTATGGCCACTCTTTATGTCGAGTA
ATCGTACCAATCAACTGCTAGTGAAAAATGTCTTTTCAAAAGCGATTGAGCGCTCAGAAGTATGTAGCAAACATAACCCT
GAAGATCTTGCTACCCTGTTTCACGGCATCTGCTACTCGCTATTCGTTCAAGCCAATCGAGCGCGTGATGAGGCCGATAT
GCAGAAACTGGTTAATAACTATTTAAATATGCTCTGTATCTATCAAGGCGATCGCGCAGTAGCTATCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

77.778

94.737

0.737
  hapR Vibrio cholerae C6706

75.743

96.651

0.732
  hapR Vibrio cholerae strain A1552

75.743

96.651

0.732