Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA86_RS15605 Genome accession   NZ_CP109445
Coordinates   3784016..3785401 (+) Length   461 a.a.
NCBI ID   WP_329175893.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01477     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3779016..3790401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA86_RS15585 (OHA86_15630) - 3779933..3780739 (+) 807 WP_329175888.1 hypothetical protein -
  OHA86_RS15590 (OHA86_15635) - 3780741..3781013 (-) 273 WP_329175890.1 helix-turn-helix transcriptional regulator -
  OHA86_RS15595 (OHA86_15640) map 3781064..3781831 (+) 768 WP_329175891.1 type I methionyl aminopeptidase -
  OHA86_RS15600 (OHA86_15645) - 3782090..3783718 (-) 1629 WP_329175892.1 hypothetical protein -
  OHA86_RS15605 (OHA86_15650) radA/sms 3784016..3785401 (+) 1386 WP_329175893.1 DNA repair protein RadA Machinery gene
  OHA86_RS15610 (OHA86_15655) disA 3785584..3786642 (+) 1059 WP_329182423.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA86_RS15615 (OHA86_15660) - 3786749..3787636 (-) 888 WP_329175895.1 hypothetical protein -
  OHA86_RS15620 (OHA86_15665) - 3787767..3788708 (+) 942 WP_329175897.1 A/G-specific adenine glycosylase -
  OHA86_RS15625 (OHA86_15670) - 3789011..3789541 (+) 531 WP_329175899.1 SigE family RNA polymerase sigma factor -
  OHA86_RS15630 (OHA86_15675) - 3789559..3790236 (+) 678 WP_329175900.1 hypothetical protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48330.41 Da        Isoelectric Point: 8.0045

>NTDB_id=676434 OHA86_RS15605 WP_329175893.1 3784016..3785401(+) (radA/sms) [Streptomyces sp. NBC_01477]
MATRKPAPKDRPSYRCTECGWTTVKWLGRCGECQAWGTVEQHGGVSAVRTTAPGRVSSPARPIAQVDGRQATARSTGVPE
LDRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKASSAEHPVLYVTGEESASQVRLRADRIGALADHLYLAAETDLSTV
LGHLDDVKPSLLVLDSVQTVASPEIDGAPGGMAQIREVAGALIRASKERGMATLLVGHVTKDGTIAGPRLLEHLVDVVLS
FEGDRHARLRLIRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDTQ
IPSPRRTTSGLENSRVSMMLAVLEQRGRIKAIGKQDIYTATVGGVRLTEPAADLAVALALASAAIDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPTDPGKVPAGMRVIEVADIGDALRALPSRASRG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=676434 OHA86_RS15605 WP_329175893.1 3784016..3785401(+) (radA/sms) [Streptomyces sp. NBC_01477]
ATGGCCACCCGCAAGCCCGCCCCGAAGGACCGTCCCTCCTACCGCTGTACCGAGTGCGGCTGGACCACGGTGAAATGGCT
CGGCCGGTGCGGCGAGTGCCAGGCGTGGGGGACGGTCGAGCAGCACGGCGGCGTGTCGGCCGTACGGACCACCGCGCCGG
GGCGGGTCAGCTCGCCCGCACGGCCGATCGCGCAGGTGGACGGGCGGCAGGCGACCGCGCGCTCGACCGGGGTGCCGGAG
CTGGACCGGGTGCTGGGCGGCGGCCTGGTGCCGGGGGCGGTGGCGCTGCTCGCGGGCGAGCCGGGGGTCGGCAAGTCCAC
ACTCCTGCTGGACGTGGCAGCGAAGGCGTCGAGCGCGGAGCACCCGGTGCTGTACGTCACGGGTGAGGAGTCGGCCTCGC
AGGTGCGGCTGCGCGCGGACCGTATCGGCGCGCTCGCCGACCACCTCTATCTGGCTGCCGAGACGGACCTGTCGACGGTG
CTCGGGCATCTGGACGACGTGAAGCCGTCGCTGCTGGTGCTGGACTCGGTGCAGACGGTGGCCTCGCCGGAGATCGACGG
CGCCCCGGGGGGCATGGCGCAGATCCGCGAGGTCGCGGGCGCGCTGATCAGGGCGTCCAAGGAGCGCGGGATGGCCACCC
TGCTGGTCGGCCATGTCACCAAGGACGGGACGATCGCCGGGCCGCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGAGC
TTCGAGGGCGACCGGCACGCGCGGCTGCGGCTGATCCGCGGGGTGAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGGATCACGGGCCTGGCCGACCCGTCCGGCCTGTTCCTGACCCGGCGTGACGAGCCGGTGC
CGGGCACGTGCCTGACGGTGACGCTCGAAGGCAAGCGGCCGCTGGTCGCGGAGGTGCAGGCGCTGACCGTGGACACCCAG
ATCCCCTCGCCTCGGCGTACGACGTCCGGCCTGGAGAATTCCCGGGTCTCGATGATGCTGGCCGTGCTGGAGCAGCGCGG
CCGGATCAAGGCGATCGGCAAGCAGGACATCTACACGGCGACCGTCGGCGGGGTGCGGCTCACCGAGCCGGCCGCCGACC
TGGCGGTGGCGCTGGCGCTGGCCAGCGCGGCGATCGACACCCCACTGCCGAAGAATCTGGTGGCGATCGGCGAGGTGGGG
CTGGCCGGCGAGGTGCGCCGGGTCACCGGTGTGCAGCGCCGCCTGTCGGAGGCGGCCCGGCTCGGCTTCACCCACGCGCT
GGTGCCGACCGACCCCGGCAAGGTGCCCGCGGGGATGCGGGTGATCGAGGTCGCGGACATCGGTGACGCCCTGCGCGCGC
TGCCTTCCAGGGCCTCCCGGGGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-40)

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

98.265

0.425
  radA Streptococcus mitis SK321

42.857

98.698

0.423
  radA Streptococcus mitis NCTC 12261

42.857

98.698

0.423
  radA Streptococcus pneumoniae Rx1

42.92

98.048

0.421
  radA Streptococcus pneumoniae TIGR4

42.92

98.048

0.421
  radA Streptococcus pneumoniae D39

42.92

98.048

0.421
  radA Streptococcus pneumoniae R6

42.92

98.048

0.421