Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG223_RS30165 Genome accession   NZ_CP109444
Coordinates   6658105..6659514 (-) Length   469 a.a.
NCBI ID   WP_329255325.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6653105..6664514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG223_RS30140 (OG223_30150) - 6653318..6653911 (-) 594 WP_329265553.1 hypothetical protein -
  OG223_RS30145 (OG223_30155) - 6653995..6654534 (-) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  OG223_RS30150 (OG223_30160) - 6654834..6655775 (-) 942 WP_329255318.1 A/G-specific adenine glycosylase -
  OG223_RS30155 (OG223_30165) - 6656064..6656885 (+) 822 WP_329255321.1 hypothetical protein -
  OG223_RS30160 (OG223_30170) disA 6656898..6658022 (-) 1125 WP_329255323.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG223_RS30165 (OG223_30175) radA/sms 6658105..6659514 (-) 1410 WP_329255325.1 DNA repair protein RadA Machinery gene
  OG223_RS30170 (OG223_30180) - 6659713..6661422 (+) 1710 WP_329255329.1 hypothetical protein -
  OG223_RS30175 (OG223_30185) - 6661427..6662293 (-) 867 WP_329255332.1 hypothetical protein -
  OG223_RS30180 (OG223_30190) - 6662377..6663309 (+) 933 WP_329255335.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49675.86 Da        Isoelectric Point: 8.0018

>NTDB_id=676356 OG223_RS30165 WP_329255325.1 6658105..6659514(-) (radA/sms) [Streptomyces sp. NBC_01478]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDARQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKIPAGMKVLEVADIGDALRVLPRSRKREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=676356 OG223_RS30165 WP_329255325.1 6658105..6659514(-) (radA/sms) [Streptomyces sp. NBC_01478]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGTTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCACCGGGCC
GCGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGCCCGCCAGGCCACCGCCCGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGCGCGGTCGTCCTCGTCGCGGGCGAACCGGGCGTGGGGAAGTCGACCCT
CCTCCTCGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCAGGATGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTCGCCGCCGAGACCGATCTGGCCACGATCCTG
GGCCACTTGGACGCGGTGAAGCCGTCGCTCCTGATCCTGGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
TCCCGGTGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGGCCACCCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTCGAACACCTCGTGGACGTAGTGCTCTCCTTC
GAGGGCGACCGGCACGCCCGCCTGCGCCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCTTGGTGGCCGAGGTCCAGGCCCTCACGGTCGACTCCCAGATC
CCCTCCCCCCGCCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCCG
AATCAGTGCCCTGGGCAAGCGGGACATCTACTCCGCCACAGTCGGCGGAGTAAAACTCTCGGAACCGGCCGCGGACCTGG
CGATCGCCCTCGCCCTGGCCTCCGCGGCGAGCGACGTCCCCCTCCCCAAGAACCTGGTCGCGATCGGCGAAGTGGGCCTG
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGACTCTCCGAAGCACACCGGCTGGGCTTCACCCACGCCCTCGT
TCCGGGCGACCCGGGCAAGATCCCGGCCGGCATGAAGGTCCTCGAAGTAGCCGACATAGGAGACGCTCTCCGGGTCCTTC
CGCGCTCCCGTAAGCGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(77-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus mitis SK321

42.478

96.375

0.409
  radA Streptococcus mitis NCTC 12261

42.478

96.375

0.409
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407