Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   OG223_RS15650 Genome accession   NZ_CP109444
Coordinates   3465186..3466274 (+) Length   362 a.a.
NCBI ID   WP_329248115.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01478     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3460186..3471274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG223_RS15620 (OG223_15625) - 3460262..3460945 (-) 684 WP_329248099.1 response regulator transcription factor -
  OG223_RS15625 (OG223_15630) - 3460942..3462189 (-) 1248 WP_329248102.1 sensor histidine kinase -
  OG223_RS15630 (OG223_15635) - 3462331..3462609 (-) 279 WP_329248105.1 hypothetical protein -
  OG223_RS15635 (OG223_15640) - 3462632..3463426 (-) 795 WP_329248108.1 PspA/IM30 family protein -
  OG223_RS15640 (OG223_15645) - 3463686..3464324 (+) 639 WP_329265290.1 DUF3043 domain-containing protein -
  OG223_RS15645 (OG223_15650) - 3464408..3465109 (+) 702 WP_329248111.1 class I SAM-dependent methyltransferase -
  OG223_RS15650 (OG223_15655) htrA 3465186..3466274 (+) 1089 WP_329248115.1 trypsin-like peptidase domain-containing protein Regulator
  OG223_RS15655 (OG223_15660) - 3466347..3466559 (-) 213 WP_033284163.1 hypothetical protein -
  OG223_RS15660 (OG223_15665) - 3466795..3467997 (+) 1203 WP_329248117.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  OG223_RS15665 (OG223_15670) - 3467994..3468527 (-) 534 WP_329248120.1 methyltransferase domain-containing protein -
  OG223_RS15670 (OG223_15675) cobT 3468666..3469718 (+) 1053 Protein_3118 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence


Protein


Download         Length: 362 a.a.        Molecular weight: 36165.46 Da        Isoelectric Point: 4.8171

>NTDB_id=676326 OG223_RS15650 WP_329248115.1 3465186..3466274(+) (htrA) [Streptomyces sp. NBC_01478]
MDSPRARAFRPIALLVCSLALVAGCSGSGSSSSSSSSSSSSKKGATTAQAAVPMASDDLQNDYLKVIKEVLPSVVQIQAS
SDLGSGVVYDDQGHIVTNAHVVGDEKTFKVTTANSEDVLTARLVYSYPGQDLAVVKLDRMPDGLKTATFADSSKVEVGQI
VLAMGSPLGLSSSVTQGIVSATGRTVSEGSSDGGTGATIANMVQTSAAINPGNSGGALVNLNGQVIGIPTLAATDPNLGG
GAAPGIGFAIPSSMVKTVADQIVKDGKVTDSGRAALGITGRTVVDDSYQAAGVAVVEVKSGGAAGKAGIQAGDIVTRLGD
TDITTITSLSEALASDQPGQKTTVTYTRNGASKKADVTLGEQ

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=676326 OG223_RS15650 WP_329248115.1 3465186..3466274(+) (htrA) [Streptomyces sp. NBC_01478]
ATGGATTCTCCCCGTGCCCGTGCCTTCCGGCCCATCGCTCTGCTCGTCTGCTCGCTCGCGCTGGTCGCCGGATGTTCCGG
CTCCGGGTCCTCGTCGTCCTCGTCGTCCTCGTCGTCCTCGTCGAAGAAGGGCGCTACGACCGCGCAGGCCGCCGTACCGA
TGGCGAGTGACGACCTCCAGAACGACTACCTGAAGGTGATCAAGGAGGTCCTGCCGTCGGTCGTGCAGATCCAGGCCAGC
AGTGATCTGGGGTCGGGGGTCGTGTACGACGACCAGGGGCACATCGTCACCAACGCGCATGTCGTCGGGGACGAGAAGAC
CTTCAAGGTGACCACCGCGAACAGCGAGGACGTGCTCACCGCCAGGCTCGTGTACTCGTATCCCGGGCAGGACCTGGCCG
TCGTCAAGCTGGACAGGATGCCGGACGGGCTGAAGACGGCGACCTTCGCCGACTCCTCCAAGGTCGAGGTGGGGCAGATC
GTCCTCGCCATGGGTTCGCCGCTCGGACTGTCGTCCAGCGTGACCCAGGGCATCGTGTCGGCGACCGGACGGACCGTCAG
CGAGGGCAGCAGCGACGGGGGTACGGGCGCGACCATCGCCAACATGGTGCAGACCTCGGCCGCGATCAACCCCGGCAACA
GCGGGGGCGCGCTCGTCAATCTGAACGGGCAGGTCATCGGCATCCCGACCCTCGCCGCGACCGACCCGAACCTCGGGGGC
GGTGCCGCGCCCGGTATCGGGTTCGCGATCCCGTCCTCGATGGTGAAGACGGTCGCCGACCAGATCGTCAAGGACGGCAA
GGTCACCGACTCGGGGCGGGCGGCCCTCGGCATCACCGGACGCACGGTCGTCGACGACAGTTATCAGGCGGCCGGGGTCG
CCGTGGTCGAGGTGAAGAGCGGTGGGGCCGCCGGCAAGGCGGGCATCCAGGCCGGCGACATCGTCACGCGGCTCGGCGAT
ACGGACATCACCACGATCACCTCCCTGTCCGAGGCGCTGGCGTCCGACCAGCCGGGGCAGAAGACGACGGTGACGTATAC
GCGGAACGGGGCGTCGAAGAAGGCCGATGTGACGCTGGGCGAGCAGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

34.974

100

0.373

  htrA Streptococcus mutans UA159

32.918

100

0.365