Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   MRO13_RS16475 Genome accession   NZ_CP095312
Coordinates   526568..528616 (-) Length   682 a.a.
NCBI ID   WP_154171116.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 521568..533616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS16450 (MRO13_16775) phnR 521770..522489 (-) 720 WP_186460022.1 phosphonate utilization transcriptional regulator PhnR -
  MRO13_RS16455 (MRO13_16780) rnk 522730..523140 (+) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  MRO13_RS16460 (MRO13_16785) yjjG 523194..523868 (-) 675 WP_004396500.1 pyrimidine 5'-nucleotidase -
  MRO13_RS16465 (MRO13_16790) elbB 523963..524613 (+) 651 WP_350940629.1 isoprenoid biosynthesis glyoxalase ElbB -
  MRO13_RS16470 (MRO13_16795) cqsA 525206..526387 (+) 1182 WP_350940631.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  MRO13_RS16475 (MRO13_16800) cqsS 526568..528616 (-) 2049 WP_154171116.1 response regulator Regulator
  MRO13_RS16480 (MRO13_16805) - 528670..531714 (-) 3045 WP_350940633.1 SMC family ATPase -
  MRO13_RS16485 (MRO13_16810) - 531718..532860 (-) 1143 WP_342652292.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78646.38 Da        Isoelectric Point: 5.7691

>NTDB_id=676309 MRO13_RS16475 WP_154171116.1 526568..528616(-) (cqsS) [Vibrio metschnikovii strain 20CO01TI02]
MDAVKKIYQYAEPNLTLVGWMGFIGFPIYYYVWTYLFPQGYESFWLRGFCSLLFAGIAFRHSFPKALQRYLPYYYLLSIG
FCLPFFFSFMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLPQAIISVLLAYFSVYVVVDAAPSQMISWTYVPIFIFTY
VFGNLFYFRNQVSHESKASLAKSFGAGIAHEMRNPLSALKSSLDVVRTLVPSPHSGQATHIINQQDLQQLHEILNDADEV
IHSGNETIDLLLTSIDQHRVSTSTFRKLSAATVVENAIHSFAYKRAVDRAAVSLTVNQDFDFFGSDTLLKFALYNLLKNA
FYYQSSEVFTINIELNRVDEQNVITVKDNGIGIEAEQLEEIFKDFYTFGKHNSYGLGLPFCRKVMHSFGGEIICHSVFGE
WTQFTLQFPDVESERIKQIKHDLLKSKSILLIGEPSLLSRHLNEQAFYLGFTLHMLTLSQAMQKEAYEFEFDLIFIDLAP
FETQWDKLSLLEGQLHFTEARISYIYDQSKRYPINISRYLTIYPIEIRHLLKDSIGTIEKLLFSIDELEVERGNIPQREV
NYQRSILLVDDNDSLRTFSAILLEKQGYDVYQAHDGQQALEILKQHTMDLILMDVEMPVIDGLQATNIIRSSMAEYRKTP
IIGYTGDNSSETINRLYRAGMNDYIVKPADKDKLLNKVADWL

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=676309 MRO13_RS16475 WP_154171116.1 526568..528616(-) (cqsS) [Vibrio metschnikovii strain 20CO01TI02]
ATGGATGCGGTAAAAAAAATATACCAATACGCAGAACCAAACTTAACGTTAGTTGGATGGATGGGCTTCATCGGTTTTCC
GATTTACTATTATGTATGGACTTACCTGTTTCCTCAAGGCTATGAATCGTTTTGGCTACGGGGATTTTGCTCGCTATTGT
TTGCCGGAATTGCTTTTCGCCACTCATTTCCCAAAGCATTACAGCGCTATTTACCGTATTACTATCTGCTTTCAATAGGC
TTTTGTTTACCTTTTTTCTTCTCTTTTATGATGTTGATGAACGATTGGTCGACAGTCTGGGCGATGTCTTTTATGGCATC
GATTTTCTTGCATATTCTGCTAGTTCATGAAACTAAGGTGATGTTGCCACAAGCGATTATTTCCGTATTACTCGCTTACT
TCTCGGTTTATGTTGTCGTTGATGCCGCCCCTAGTCAGATGATTTCTTGGACTTATGTACCTATTTTTATCTTTACTTAT
GTATTCGGTAATCTGTTCTACTTTCGTAATCAGGTATCACACGAGAGCAAAGCATCATTAGCAAAATCGTTTGGTGCAGG
AATTGCACACGAAATGCGTAATCCACTCAGTGCGCTTAAGTCTTCTCTTGATGTGGTGCGTACTCTAGTTCCTTCCCCCC
ATTCAGGCCAAGCAACTCATATTATTAATCAACAAGACTTACAGCAATTGCATGAAATATTAAATGATGCGGATGAGGTG
ATTCATTCTGGTAATGAAACCATAGATTTATTGTTAACGTCAATTGATCAGCATCGTGTCTCAACGTCGACCTTTCGAAA
ATTATCCGCTGCTACGGTGGTTGAAAATGCTATTCATTCTTTTGCCTACAAACGGGCCGTCGATCGAGCAGCCGTTTCAT
TAACCGTTAATCAAGATTTTGATTTTTTTGGTAGCGATACCTTACTTAAGTTTGCGTTGTACAATTTACTGAAAAATGCT
TTTTATTATCAAAGTAGTGAAGTGTTTACGATTAACATCGAATTGAATCGAGTCGATGAGCAGAATGTGATTACTGTCAA
AGATAATGGGATTGGTATTGAAGCAGAACAGCTCGAAGAAATTTTTAAGGACTTCTATACCTTTGGTAAACATAATAGTT
ATGGGTTAGGGCTGCCTTTTTGTCGAAAAGTTATGCATTCATTTGGCGGTGAAATTATTTGCCATTCCGTCTTCGGTGAA
TGGACCCAATTTACCCTTCAGTTTCCAGATGTTGAATCCGAACGTATCAAACAGATAAAACACGATCTACTAAAATCTAA
ATCGATTTTATTGATTGGTGAACCGAGTTTATTAAGTCGGCATCTGAATGAACAAGCTTTTTATTTAGGATTTACTTTGC
ATATGCTCACTCTCAGTCAAGCGATGCAAAAAGAAGCGTATGAATTTGAATTTGATCTTATTTTTATTGATTTAGCTCCA
TTTGAAACACAGTGGGATAAATTGAGCTTACTGGAAGGCCAATTACATTTTACTGAAGCCAGAATTAGTTATATTTATGA
CCAATCTAAGCGTTATCCTATTAATATCTCTCGTTACTTAACAATTTATCCAATTGAAATACGTCATTTGTTAAAAGACA
GTATTGGAACCATCGAGAAGCTATTATTTTCGATTGATGAGCTTGAGGTTGAAAGGGGAAATATCCCACAACGAGAAGTC
AATTATCAAAGAAGCATCTTATTAGTCGATGACAATGATTCTTTACGAACATTTTCTGCTATATTATTAGAAAAGCAGGG
TTATGATGTTTATCAAGCTCATGATGGTCAACAAGCTTTAGAGATATTAAAACAACATACTATGGATTTAATCTTAATGG
ATGTTGAAATGCCAGTTATTGATGGATTACAGGCGACGAATATCATCCGCAGTTCAATGGCCGAATACCGAAAAACGCCT
ATTATTGGCTATACAGGGGATAATAGCTCAGAAACGATAAATCGTCTCTACCGTGCTGGAATGAATGATTATATTGTTAA
ACCTGCTGATAAAGATAAATTATTAAATAAAGTGGCCGATTGGTTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

57.101

100

0.572