Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   MRO13_RS16470 Genome accession   NZ_CP095312
Coordinates   525206..526387 (+) Length   393 a.a.
NCBI ID   WP_350940631.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 520206..531387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS16445 (MRO13_16770) - 520893..521681 (+) 789 WP_350940626.1 siderophore-interacting protein -
  MRO13_RS16450 (MRO13_16775) phnR 521770..522489 (-) 720 WP_186460022.1 phosphonate utilization transcriptional regulator PhnR -
  MRO13_RS16455 (MRO13_16780) rnk 522730..523140 (+) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  MRO13_RS16460 (MRO13_16785) yjjG 523194..523868 (-) 675 WP_004396500.1 pyrimidine 5'-nucleotidase -
  MRO13_RS16465 (MRO13_16790) elbB 523963..524613 (+) 651 WP_350940629.1 isoprenoid biosynthesis glyoxalase ElbB -
  MRO13_RS16470 (MRO13_16795) cqsA 525206..526387 (+) 1182 WP_350940631.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  MRO13_RS16475 (MRO13_16800) cqsS 526568..528616 (-) 2049 WP_154171116.1 response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43650.73 Da        Isoelectric Point: 6.9587

>NTDB_id=676308 MRO13_RS16470 WP_350940631.1 525206..526387(+) (cqsA) [Vibrio metschnikovii strain 20CO01TI02]
MKYGTSKKQLPEFIQQRLDLFINDLIDSNNNGKHLVLGKRPSTNDIILQSNDYLSLSHHPLIKAHLKQAIDDSTDSVFMS
AIFLQDEADKPDLEQQLAQFAQFDTCLLSQSGWNANTALLQTICSADTNVYIDFFAHMSLWEGARYANAHLHPFMHNHCD
HLVKLIKRHGPGLIVVDSIYSTIGTVAPLADLVAIAKQYGCAILVDESHSLGTHGPKGAGLLAELGLSSQVDFMTVSLAK
SFAYRAGAIWANNHVDRCLPFVGYPAIFSSTILPYEVAALSATLSVIQSADERRKQLFRHSERLRHGLLELGFTIRSQSQ
IIALETGDERNTENVRDFLENNGVFGAVFCRPATAKNKNIIRLSLNSSLKDSDIQKILSVCESAIHNKQLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=676308 MRO13_RS16470 WP_350940631.1 525206..526387(+) (cqsA) [Vibrio metschnikovii strain 20CO01TI02]
ATGAAATATGGCACCTCAAAAAAACAACTACCTGAATTTATTCAACAACGATTAGATTTATTTATTAACGACCTTATTGA
TAGTAATAATAATGGCAAACATTTGGTTCTAGGCAAGCGTCCGAGCACTAATGATATTATTTTACAGAGTAATGATTACC
TTAGTTTATCTCATCATCCGCTCATTAAGGCTCACTTAAAACAAGCCATCGATGATAGTACCGATAGTGTGTTTATGTCG
GCGATCTTTTTACAAGATGAGGCTGACAAACCTGATCTTGAGCAACAGCTTGCCCAATTTGCTCAATTTGATACGTGTCT
ACTTTCGCAGTCTGGCTGGAATGCGAATACCGCACTATTACAAACGATCTGCTCAGCCGATACCAACGTCTATATCGACT
TTTTTGCTCATATGTCACTTTGGGAGGGAGCTCGCTATGCCAATGCTCATCTGCACCCTTTTATGCATAATCACTGTGAT
CATTTAGTGAAGCTCATTAAACGTCATGGACCCGGATTGATCGTGGTCGATTCTATCTATAGTACAATTGGTACTGTCGC
CCCATTAGCAGATTTAGTTGCGATAGCTAAACAGTATGGTTGCGCTATTTTAGTTGATGAGTCCCATTCACTCGGAACTC
ATGGTCCTAAAGGTGCCGGTTTGCTCGCTGAACTTGGTTTATCATCACAGGTTGATTTTATGACGGTGAGTTTAGCGAAA
AGCTTTGCTTATCGAGCTGGCGCTATCTGGGCGAATAACCATGTTGATCGCTGTTTACCTTTTGTCGGTTATCCCGCGAT
CTTTAGCTCGACAATTCTACCTTATGAAGTCGCAGCGCTCAGTGCTACGTTATCGGTAATCCAATCGGCGGATGAAAGAA
GAAAACAACTTTTTCGTCACAGTGAGCGGTTACGTCATGGCTTACTTGAACTTGGTTTTACGATTCGTAGTCAATCGCAA
ATTATTGCTTTAGAAACAGGCGATGAACGTAATACCGAAAATGTTCGTGATTTTCTAGAGAATAATGGCGTATTTGGCGC
AGTCTTTTGTCGCCCTGCCACGGCAAAAAATAAAAACATTATTCGATTATCGTTAAATAGCTCACTAAAAGACTCTGACA
TTCAAAAAATTCTCTCAGTCTGTGAGTCTGCGATACACAATAAGCAACTCTATTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.814

98.728

0.679