Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   MRO13_RS02460 Genome accession   NZ_CP095311
Coordinates   518083..518712 (-) Length   209 a.a.
NCBI ID   WP_170906298.1    Uniprot ID   A0A9X0R8J6
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 513083..523712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS02450 (MRO13_02450) aceF 514395..516284 (+) 1890 WP_217519591.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  MRO13_RS02455 (MRO13_02455) lpdA 516551..517978 (+) 1428 WP_004394244.1 dihydrolipoyl dehydrogenase -
  MRO13_RS02460 (MRO13_02460) hapR 518083..518712 (-) 630 WP_170906298.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  MRO13_RS02465 (MRO13_02465) hpt 519099..519629 (+) 531 WP_072671420.1 hypoxanthine phosphoribosyltransferase -
  MRO13_RS02470 (MRO13_02470) can 519707..520375 (-) 669 WP_004394240.1 carbonate dehydratase -
  MRO13_RS02475 (MRO13_02475) - 520639..521562 (+) 924 WP_170906297.1 ABC transporter ATP-binding protein -
  MRO13_RS02480 (MRO13_02480) - 521562..522332 (+) 771 WP_004394238.1 ABC transporter permease -
  MRO13_RS02485 (MRO13_02485) panC 522459..523340 (-) 882 WP_004394237.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24020.43 Da        Isoelectric Point: 6.6008

>NTDB_id=676282 MRO13_RS02460 WP_170906298.1 518083..518712(-) (hapR) [Vibrio metschnikovii strain 20CO01TI02]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVREFSNFL
TDHIDLDLHAKQNMHNIASGMVSLAIDDCHWLKVWFEWSASTRDEVWPLFMSSNRTNQLLVKNVFSKAIERSEVCNKHNP
EDLATLFHGICYSLFVQANRARDESDMQKLVNNYLNMLCIYQGDRAVAI

Nucleotide


Download         Length: 630 bp        

>NTDB_id=676282 MRO13_RS02460 WP_170906298.1 518083..518712(-) (hapR) [Vibrio metschnikovii strain 20CO01TI02]
ATGGACGCATCTATTGAGAAACGCCCTAGAACAAGGCTATCTCCACAAAAACGTAAACAGCAACTCATGGAAATCGCGCT
AGAAGTCTTCGCGAAACGAGGGATCGGCCGCGGCGGTCATGCAGATATTGCTGAGATCGCTCAGGTCTCAGTAGCCACAG
TATTCAATTACTTCCCGACCCGTGAAGATCTCGTCGATGACGTTCTCACTTTTGTGGTGCGTGAGTTCTCTAATTTCTTA
ACTGACCATATCGATCTCGATTTGCATGCAAAACAAAATATGCACAATATCGCGTCTGGTATGGTGAGTTTGGCTATCGA
CGACTGTCACTGGTTAAAAGTATGGTTTGAGTGGAGCGCCTCTACGCGTGATGAAGTATGGCCACTCTTTATGTCGAGTA
ATCGTACCAATCAATTGCTAGTGAAAAATGTCTTTTCAAAAGCGATTGAGCGCTCAGAGGTATGCAATAAACATAACCCT
GAAGATCTTGCTACCCTGTTTCACGGCATCTGCTACTCGCTGTTCGTTCAAGCCAATCGAGCGCGTGATGAGTCCGATAT
GCAGAAACTGGTTAATAACTATTTAAATATGCTCTGCATCTATCAAGGCGATCGCGCAGTAGCTATCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

75.743

96.651

0.732
  hapR Vibrio cholerae strain A1552

75.743

96.651

0.732
  opaR Vibrio parahaemolyticus RIMD 2210633

77.273

94.737

0.732