Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | IOMTU133_RS25405 | Genome accession | NZ_AP017302 |
| Coordinates | 5526966..5527838 (+) | Length | 290 a.a. |
| NCBI ID | WP_023111807.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain IOMTU 133 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5521966..5532838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOMTU133_RS25390 (IOMTU133_5238) | - | 5523349..5523813 (-) | 465 | WP_023111806.1 | pilin | - |
| IOMTU133_RS25395 (IOMTU133_5239) | pilB | 5524044..5525744 (+) | 1701 | WP_003107297.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IOMTU133_RS25400 (IOMTU133_5240) | pilC | 5525748..5526965 (+) | 1218 | WP_003107299.1 | type II secretion system F family protein | Machinery gene |
| IOMTU133_RS25405 (IOMTU133_5241) | pilD | 5526966..5527838 (+) | 873 | WP_023111807.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| IOMTU133_RS25410 (IOMTU133_5242) | coaE | 5527835..5528446 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| IOMTU133_RS25415 (IOMTU133_5243) | yacG | 5528443..5528643 (+) | 201 | WP_017148551.1 | DNA gyrase inhibitor YacG | - |
| IOMTU133_RS25420 (IOMTU133_5244) | - | 5528680..5528889 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| IOMTU133_RS25425 (IOMTU133_5245) | - | 5528995..5529684 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| IOMTU133_RS25430 (IOMTU133_5246) | - | 5529681..5530151 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| IOMTU133_RS25435 (IOMTU133_5247) | - | 5530148..5530573 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| IOMTU133_RS25440 (IOMTU133_5248) | - | 5530706..5531335 (+) | 630 | WP_023111808.1 | DUF1780 domain-containing protein | - |
| IOMTU133_RS25445 (IOMTU133_5249) | - | 5531332..5531781 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| IOMTU133_RS25450 (IOMTU133_5250) | - | 5531807..5531977 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31858.85 Da Isoelectric Point: 7.7068
>NTDB_id=67623 IOMTU133_RS25405 WP_023111807.1 5526966..5527838(+) (pilD) [Pseudomonas aeruginosa strain IOMTU 133]
MTLLDYLASHPQAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPQAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=67623 IOMTU133_RS25405 WP_023111807.1 5526966..5527838(+) (pilD) [Pseudomonas aeruginosa strain IOMTU 133]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCAGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCAGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50.189 |
91.379 |
0.459 |