Detailed information NTG0676127

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MU311_RS22280
• Genome accession: NZ_CP095247
• Coordinates: 4460413..4461213 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 21080534
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4455413..4466213

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MU311_RS22245 (MU311_22245)	gspH	4455569..4456084 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
MU311_RS22250 (MU311_22250)	gspI	4456081..4456446 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
MU311_RS22255 (MU311_22255)	gspJ	4456443..4457039 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
MU311_RS22260 (MU311_22260)	gspK	4457036..4458022 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
MU311_RS22265 (MU311_22265)	gspL	4458009..4459202 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
MU311_RS22270 (MU311_22270)	-	4459195..4459680 (+)	486	WP_004151943.1	type II secretion system protein M	-
MU311_RS22275 (MU311_22275)	-	4459670..4460416 (+)	747	WP_004145897.1	type II secretion system protein N	-
MU311_RS22280 (MU311_22280)	pilD	4460413..4461213 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
MU311_RS22285 (MU311_22285)	hrpB	4461261..4463690 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
MU311_RS22290 (MU311_22290)	thpR	4463763..4464299 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
MU311_RS22295 (MU311_22295)	sfsA	4464299..4465015 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
MU311_RS22300 (MU311_22300)	dksA	4465178..4465633 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=676127 MU311_RS22280 WP_002888947.1 4460413..4461213(+) (pilD) [Klebsiella pneumoniae strain 21080534]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=676127 MU311_RS22280 WP_002888947.1 4460413..4461213(+) (pilD) [Klebsiella pneumoniae strain 21080534]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425