Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG329_RS16690 Genome accession   NZ_CP109422
Coordinates   3829585..3830997 (+) Length   470 a.a.
NCBI ID   WP_405795981.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3824585..3835997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG329_RS16670 (OG329_16625) - 3824588..3825568 (-) 981 WP_405795976.1 sugar phosphate isomerase/epimerase family protein -
  OG329_RS16675 (OG329_16630) - 3825731..3826669 (-) 939 WP_405795977.1 Ppx/GppA family phosphatase -
  OG329_RS16680 (OG329_16635) - 3826709..3827572 (+) 864 WP_405795978.1 hypothetical protein -
  OG329_RS16685 (OG329_16640) - 3827598..3829415 (-) 1818 WP_405795980.1 BACON domain-containing protein -
  OG329_RS16690 (OG329_16645) radA/sms 3829585..3830997 (+) 1413 WP_405795981.1 DNA repair protein RadA Machinery gene
  OG329_RS16695 (OG329_16650) disA 3831042..3832175 (+) 1134 WP_078075735.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG329_RS16700 (OG329_16655) - 3832272..3833114 (-) 843 WP_405795983.1 hypothetical protein -
  OG329_RS16705 (OG329_16660) - 3833296..3834054 (+) 759 WP_405795984.1 phosphatase PAP2 family protein -
  OG329_RS16710 (OG329_16665) - 3834221..3835132 (+) 912 WP_405795985.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49415.48 Da        Isoelectric Point: 8.0025

>NTDB_id=676009 OG329_RS16690 WP_405795981.1 3829585..3830997(+) (radA/sms) [Streptomyces sp. NBC_01506]
MAVARTKSAKDRSSYRCTECGWTTVKWLGRCPECQAWGTVEEYGTPAVRTTAAGRVSTPALPIGQIDGRTATARSTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASAEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRTSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDAPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPTNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPAGMKVTEVADMGAALSVLPRRGRTQAPQADNDRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=676009 OG329_RS16690 WP_405795981.1 3829585..3830997(+) (radA/sms) [Streptomyces sp. NBC_01506]
ATGGCTGTCGCCCGTACGAAATCCGCCAAGGACCGGTCGTCCTACCGCTGTACCGAGTGCGGTTGGACGACCGTCAAGTG
GCTCGGCCGCTGCCCCGAGTGCCAGGCATGGGGCACGGTCGAGGAGTACGGCACGCCCGCCGTACGGACCACGGCGGCCG
GCCGGGTCAGCACCCCGGCCCTCCCGATCGGCCAGATCGACGGCCGGACGGCGACGGCGCGCTCGACGGGCGTGGACGAG
CTGGACCGCGTCCTCGGCGGGGGGCTCGTGCCGGGAGCCGTCGTGCTGGTGGCCGGTGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTCCTGGACGTCGCGGCGAAGGCGGCCAGCGCCGAGCACCGCACGCTGTATGTGACGGGCGAGGAGTCGGCCAGCC
AGGTGCGGCTGCGCGCGGACCGCATCAAGGCCATCGACGACCATCTGTATCTCGCGGCCGAGACGGATCTCTCCGCCGTC
CTCGGGCATCTGGACGCGGTCAAGCCGTCGCTGCTCGTCCTCGACTCCGTACAGACGGTGGCGTCGCCGGAGATCGACGG
AGCGCCCGGCGGCATGGCCCAGGTCCGGGAGGTCGCGGGCGCGCTCATCCGCACCTCCAAGGAGCGGGGCATGTCCACCC
TGCTCGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCGCGGCTGCGCCTGGTGCGAGGCGTCAAGAACCGATACGGCACGACGGACGAGGTGGGCTG
TTTCGAGCTGCACGACGAAGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTCACGCGCCGTGACGCGCCGGTGC
CCGGCACCTGTCTGACGGTCACGCTCGAAGGCCGCCGCCCGCTCGTCGCCGAGGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCGTCCCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTTCTCGAACAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCGGAGCCGGCCGCGGACC
TGGCGATCGCCCTCGCCCTGGCGTCAGCGGCGAGCGACACCCCGCTGCCGACGAATCTCGTCGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGACTGGCCGAGGCGCACCGGCTGGGCTTCACACACGCGCT
CGTCCCGACCGATCCGGGCAAGATCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGGGCGGCTCTCAGCGTGC
TTCCGCGCCGGGGTCGTACACAGGCCCCACAGGCCGACAACGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(15-42)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(83-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

96.383

0.428
  radA Streptococcus pneumoniae Rx1

43.925

91.064

0.4
  radA Streptococcus pneumoniae D39

43.925

91.064

0.4
  radA Streptococcus pneumoniae R6

43.925

91.064

0.4
  radA Streptococcus pneumoniae TIGR4

43.925

91.064

0.4
  radA Streptococcus mitis SK321

43.925

91.064

0.4
  radA Streptococcus mitis NCTC 12261

43.925

91.064

0.4