Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MUU73_RS04915 Genome accession   NZ_CP095184
Coordinates   1027317..1028717 (+) Length   466 a.a.
NCBI ID   WP_162108371.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain F12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022317..1033717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU73_RS04895 (MUU73_04895) - 1022467..1023042 (-) 576 WP_245126432.1 sigma-70 family RNA polymerase sigma factor -
  MUU73_RS04900 (MUU73_04900) sucD 1023165..1024043 (-) 879 WP_245125198.1 succinate--CoA ligase subunit alpha -
  MUU73_RS04905 (MUU73_04905) sucC 1024139..1025308 (-) 1170 WP_187573323.1 ADP-forming succinate--CoA ligase subunit beta -
  MUU73_RS04910 (MUU73_04910) - 1025509..1027128 (+) 1620 WP_245125200.1 ATP-binding protein -
  MUU73_RS04915 (MUU73_04915) pilR 1027317..1028717 (+) 1401 WP_162108371.1 sigma-54 dependent transcriptional regulator Regulator
  MUU73_RS17630 - 1029177..1029599 (+) 423 WP_280640401.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MUU73_RS04930 (MUU73_04930) - 1029711..1031804 (+) 2094 WP_245125203.1 tetratricopeptide repeat protein -
  MUU73_RS04935 (MUU73_04935) - 1031686..1032660 (+) 975 WP_245125206.1 glycosyltransferase family 2 protein -
  MUU73_RS04940 (MUU73_04940) - 1032657..1033265 (+) 609 WP_245125209.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50487.72 Da        Isoelectric Point: 5.5526

>NTDB_id=675979 MUU73_RS04915 WP_162108371.1 1027317..1028717(+) (pilR) [Pseudoxanthomonas mexicana strain F12]
MNQSRSALIVDDERDIRELLTLTLGRMGLRIDTAANVGEARELLARNTYDLCFTDMRLPDGNGIDLVGEISRNYPNTPVA
MITAFGNIELAVEALKAGAFDFVSKPVDLAVLRGLVKHALELNNADRAPPPPPPPEQASRLLGSSAAMDALRETIAKVAR
SQAPVYIMGESGTGKELVARTIHEQGARASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAANGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASGEVQVDVRILSATHKDLGELAADGRFRHDLYYRINVIELRVPPLRERTGDLA
QLTSAILDRLAAQHGRMAPSVSPEAMEALGRYPFPGNVRELENILERALAMSEGHSIEIDDLYLPQAPAGRKFGGDFSPG
EVVRDAPGAVDVDPAAGALPDYIEQLERAAIQKALEENRWNKTKAAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=675979 MUU73_RS04915 WP_162108371.1 1027317..1028717(+) (pilR) [Pseudoxanthomonas mexicana strain F12]
ATGAATCAAAGCCGTAGCGCCCTGATCGTCGACGACGAACGCGACATCCGAGAACTGCTGACACTGACGCTGGGCCGCAT
GGGCCTGCGCATCGACACCGCCGCCAACGTGGGCGAAGCCCGCGAACTGCTGGCCCGCAACACCTACGATCTCTGCTTCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGACCTGGTCGGCGAGATCTCGCGCAACTATCCGAATACGCCAGTGGCG
ATGATCACCGCCTTCGGCAACATCGAGCTGGCCGTGGAGGCGCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCCGT
GGACCTGGCCGTGCTGCGTGGCCTGGTGAAGCATGCGCTGGAACTGAACAACGCCGACCGCGCACCGCCACCCCCGCCGC
CCCCGGAACAGGCCAGCCGCCTGCTGGGCAGTTCGGCGGCGATGGACGCGCTGCGCGAAACCATTGCCAAGGTGGCCCGC
AGCCAGGCGCCGGTCTACATCATGGGCGAGTCCGGCACCGGCAAGGAGCTGGTGGCCCGCACCATCCACGAACAGGGCGC
GCGCGCGTCCGGCCCCTTCGTACCGGTCAACTGCGGCGCCATTCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCAGGGCCTGTTCCAGGCGGCCAACGGTGGCACGCTGTTCCTGGAC
GAGGTGGCCGAGTTGCCGCTGCCCATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAGAAGGCGGTGCGTCCGGTCGGCGC
CTCCGGCGAGGTGCAGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGATCTGGGCGAGCTGGCGGCCGATGGCCGTT
TCCGCCATGACCTGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCACGGGCGACCTGGCG
CAGCTGACCAGCGCCATCCTGGATCGCCTGGCCGCCCAGCACGGGCGCATGGCGCCATCGGTGTCGCCGGAGGCGATGGA
GGCGCTGGGGCGCTATCCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGCTGGCCATGTCCGAGG
GCCACAGCATCGAGATCGACGACCTGTACCTGCCGCAGGCCCCGGCCGGCAGGAAGTTCGGCGGCGATTTCAGCCCCGGC
GAAGTGGTGCGCGACGCGCCCGGCGCCGTCGACGTGGACCCGGCCGCGGGCGCCCTGCCCGACTACATCGAGCAGTTGGA
GCGCGCGGCCATCCAGAAGGCGCTGGAGGAGAACCGCTGGAACAAGACCAAGGCGGCGGCCCAGCTGGGGATCACCTTCC
GCGCCTTGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.935

99.785

0.618
  pilR Acinetobacter baumannii strain A118

48.394

100

0.485