Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   LNL76_RS08175 Genome accession   NZ_CP095161
Coordinates   1641172..1641528 (+) Length   118 a.a.
NCBI ID   WP_110479110.1    Uniprot ID   A0AAE5TL27
Organism   Avibacterium paragallinarum strain ZJ-C     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1636172..1646528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNL76_RS08155 - 1637040..1638308 (-) 1269 WP_110479164.1 AmpG family muropeptide MFS transporter -
  LNL76_RS08160 galE 1638372..1639388 (-) 1017 WP_110479112.1 UDP-glucose 4-epimerase GalE -
  LNL76_RS08165 - 1639426..1639566 (-) 141 WP_165816415.1 hypothetical protein -
  LNL76_RS08170 - 1639597..1640910 (+) 1314 WP_110479111.1 NCS2 family permease -
  LNL76_RS08175 comE1/comEA 1641172..1641528 (+) 357 WP_110479110.1 helix-hairpin-helix domain-containing protein Machinery gene
  LNL76_RS08180 rdgB 1641666..1642262 (+) 597 WP_110479109.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  LNL76_RS08185 hemW 1642262..1643416 (+) 1155 WP_110479108.1 radical SAM family heme chaperone HemW -
  LNL76_RS08190 luxS 1643484..1643990 (-) 507 WP_035685396.1 S-ribosylhomocysteine lyase -
  LNL76_RS08195 - 1644213..1644671 (-) 459 WP_110479107.1 YqaA family protein -
  LNL76_RS08200 - 1644664..1645272 (-) 609 WP_110479106.1 sugar O-acetyltransferase -
  LNL76_RS08205 - 1645273..1645875 (-) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  LNL76_RS08210 - 1646018..1646395 (+) 378 WP_110479105.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12839.72 Da        Isoelectric Point: 8.4831

>NTDB_id=675791 LNL76_RS08175 WP_110479110.1 1641172..1641528(+) (comE1/comEA) [Avibacterium paragallinarum strain ZJ-C]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTNNKTIDTTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ

Nucleotide


Download         Length: 357 bp        

>NTDB_id=675791 LNL76_RS08175 WP_110479110.1 1641172..1641528(+) (comE1/comEA) [Avibacterium paragallinarum strain ZJ-C]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGAATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAGAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGGATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(47-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

52.679

94.915

0.5
  comEA/comE1 Glaesserella parasuis strain SC1401

50

89.831

0.449