Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA78_RS11090 Genome accession   NZ_CP095116
Coordinates   2211535..2211930 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6156     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2206535..2216930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA78_RS11065 (MUA78_11055) thiE 2207133..2207774 (-) 642 WP_000483158.1 thiamine phosphate synthase -
  MUA78_RS11070 (MUA78_11060) thiM 2207779..2208567 (-) 789 WP_001108485.1 hydroxyethylthiazole kinase -
  MUA78_RS11075 (MUA78_11065) thiD 2208551..2209381 (-) 831 WP_000594955.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA78_RS11080 (MUA78_11070) tenA 2209374..2210063 (-) 690 WP_250405851.1 thiaminase II -
  MUA78_RS11085 (MUA78_11075) sceD 2210450..2211145 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  MUA78_RS11090 (MUA78_11080) ssb 2211535..2211930 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  MUA78_RS11095 (MUA78_11085) - 2212124..2212564 (+) 441 WP_000846746.1 YwpF-like family protein -
  MUA78_RS11100 (MUA78_11090) fabZ 2212621..2213061 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA78_RS11105 (MUA78_11095) murA 2213095..2214360 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA78_RS11110 (MUA78_11100) - 2214471..2214704 (-) 234 WP_000384523.1 DUF1146 family protein -
  MUA78_RS11115 (MUA78_11105) - 2214836..2214929 (-) 94 Protein_2158 hypothetical protein -
  MUA78_RS11120 (MUA78_11110) - 2215322..2215726 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=675590 MUA78_RS11090 WP_000932694.1 2211535..2211930(-) (ssb) [Staphylococcus aureus strain IVB6156]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=675590 MUA78_RS11090 WP_000932694.1 2211535..2211930(-) (ssb) [Staphylococcus aureus strain IVB6156]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992