Detailed information NTG0067549

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ECO25NV_RS23270
• Genome accession: NZ_AP022326
• Coordinates: 4783913..4784938 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli O25:H4 strain 18044
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4778913..4789938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECO25NV_RS23250 (ECO25NV_44950)	metJ	4780098..4780415 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
ECO25NV_RS23255 (ECO25NV_44960)	yiiX	4780475..4781083 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
ECO25NV_RS23260 (ECO25NV_44970)	rpmE	4781144..4781356 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ECO25NV_RS23265 (ECO25NV_44980)	priA	4781559..4783757 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
ECO25NV_RS23270 (ECO25NV_44990)	cytR	4783913..4784938 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
ECO25NV_RS23275 (ECO25NV_45000)	ftsN	4785030..4785989 (+)	960	WP_000068834.1	cell division protein FtsN	-
ECO25NV_RS23280 (ECO25NV_45010)	hslV	4786082..4786612 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ECO25NV_RS23285 (ECO25NV_45020)	hslU	4786622..4787953 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
ECO25NV_RS23290 (ECO25NV_45030)	menA	4788020..4788946 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ECO25NV_RS23295 (ECO25NV_45040)	rraA	4789039..4789524 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ECO25NV_RS23300 (ECO25NV_45050)	zapB	4789609..4789854 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=67549 ECO25NV_RS23270 WP_000644908.1 4783913..4784938(+) (cytR) [Escherichia coli O25:H4 strain 18044]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=67549 ECO25NV_RS23270 WP_000644908.1 4783913..4784938(+) (cytR) [Escherichia coli O25:H4 strain 18044]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625