Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   MUA12_RS08640 Genome accession   NZ_CP095104
Coordinates   1689415..1690458 (-) Length   347 a.a.
NCBI ID   WP_002481663.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6179     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1684415..1695458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA12_RS08610 (MUA12_08565) - 1685540..1685746 (-) 207 WP_262577061.1 DUF1128 domain-containing protein -
  MUA12_RS08615 (MUA12_08570) - 1685970..1686434 (+) 465 WP_023015860.1 low molecular weight protein-tyrosine-phosphatase -
  MUA12_RS08620 (MUA12_08575) - 1686442..1686732 (+) 291 WP_002481659.1 hypothetical protein -
  MUA12_RS08625 (MUA12_08580) - 1686863..1687939 (+) 1077 WP_105978635.1 YihY/virulence factor BrkB family protein -
  MUA12_RS08630 (MUA12_08585) - 1688147..1688725 (+) 579 WP_262577064.1 carbonic anhydrase -
  MUA12_RS08635 (MUA12_08590) vraR 1688796..1689425 (-) 630 WP_002481662.1 response regulator transcription factor Regulator
  MUA12_RS08640 (MUA12_08595) vraS 1689415..1690458 (-) 1044 WP_002481663.1 sensor histidine kinase Regulator
  MUA12_RS08645 (MUA12_08600) liaF 1690455..1691156 (-) 702 WP_002481664.1 cell wall-active antibiotics response protein LiaF -
  MUA12_RS08650 (MUA12_08605) - 1691172..1691567 (-) 396 WP_262577066.1 hypothetical protein -
  MUA12_RS08655 (MUA12_08610) map 1691683..1692447 (-) 765 WP_002481666.1 type I methionyl aminopeptidase -
  MUA12_RS08660 (MUA12_08615) - 1692667..1693653 (+) 987 WP_002481667.1 aromatic acid exporter family protein -
  MUA12_RS08665 (MUA12_08620) - 1693736..1694455 (-) 720 WP_262577068.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39897.15 Da        Isoelectric Point: 4.8944

>NTDB_id=675472 MUA12_RS08640 WP_002481663.1 1689415..1690458(-) (vraS) [Staphylococcus simulans strain IVB6179]
MNHYIRAIGSMLILNYSILAIFFFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNIIVILMSIIVGSVLAYKVNEQNDWIKT
QIEHSIEGEVVGINDQNIELYQETLDIYHTLVPLNQELHRLRIKTQDLTNETYNLNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESPLEPPLDQQIPTLEKMVQDSQLEMRALLLHLRPLGLKDRSLGEGIKDLVVDLQKKVPMKVVYDI
EDFEVPKGIEDHLFRITQEGISNTLRHAEGTKLTIDLFNKDDYLLLRIQDDGKGFDVDEKMEKSYGLKNMRERALEIGAT
LHIVSLPGAGTRIEVKAPLNKEENDGD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=675472 MUA12_RS08640 WP_002481663.1 1689415..1690458(-) (vraS) [Staphylococcus simulans strain IVB6179]
ATGAACCACTATATCAGAGCCATCGGTTCGATGCTGATATTGAACTATAGTATTTTAGCGATTTTCTTTTTTATAGACAA
AGTATTCGTCAACATCATCTACTTTCAAGGAATGTTTTACACGCAGATTTTCGGCATTCCTGTTTTCTTATTTTTAAATA
TTATAGTGATTTTGATGAGTATTATTGTTGGTTCTGTGTTAGCGTATAAAGTGAACGAACAAAATGATTGGATTAAAACA
CAAATCGAACATTCCATTGAAGGGGAAGTTGTCGGTATTAATGATCAAAATATCGAACTCTACCAAGAAACTTTGGATAT
CTATCATACACTTGTGCCATTAAACCAAGAATTACATCGACTACGTATTAAAACACAAGATTTGACCAATGAAACATATA
ATTTAAATGACGTTAAAGTGAAGAAAATTATAGAAGATGAACGCCAGCGTTTAGCTAGGGAATTGCATGATTCAGTTAGT
CAGCAATTATTTGCGGCAAGTATGATGTTATCGGCGATTAAGGAATCACCACTTGAACCGCCGCTTGATCAGCAAATTCC
GACACTAGAAAAGATGGTACAAGATTCGCAACTAGAAATGCGTGCATTGTTATTACATTTAAGACCGCTTGGCTTAAAAG
ATCGCTCACTTGGGGAAGGAATTAAAGATCTTGTTGTGGACTTACAAAAGAAAGTGCCTATGAAAGTAGTTTATGATATT
GAAGACTTTGAGGTACCAAAAGGCATAGAAGATCATTTATTCCGTATCACCCAAGAAGGGATTTCCAATACACTGCGACA
TGCAGAAGGCACAAAATTAACGATAGATTTATTTAATAAAGATGATTATCTATTATTGCGTATTCAAGATGATGGTAAAG
GCTTTGATGTAGATGAAAAAATGGAGAAAAGCTATGGATTGAAGAATATGCGAGAGCGAGCATTAGAAATCGGGGCAACA
CTGCATATTGTTTCTTTGCCTGGGGCAGGGACAAGAATTGAAGTGAAGGCTCCATTGAATAAGGAGGAAAATGATGGCGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

86.167

100

0.862