Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG607_RS26535 Genome accession   NZ_CP109392
Coordinates   5752411..5753091 (+) Length   226 a.a.
NCBI ID   WP_405728385.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01537 strain NBC 01537     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5747411..5758091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG607_RS26530 (OG607_26460) - 5750492..5751700 (+) 1209 WP_405728382.1 sensor histidine kinase -
  OG607_RS26535 (OG607_26465) vraR 5752411..5753091 (+) 681 WP_405728385.1 response regulator Regulator
  OG607_RS26540 (OG607_26470) - 5753318..5754016 (+) 699 WP_405728388.1 class I SAM-dependent methyltransferase -
  OG607_RS26545 (OG607_26475) - 5754091..5754873 (-) 783 WP_405728391.1 NPP1 family protein -
  OG607_RS26550 (OG607_26480) - 5755191..5755598 (+) 408 WP_405728394.1 hypothetical protein -
  OG607_RS26555 (OG607_26485) - 5755700..5756572 (-) 873 WP_405728397.1 amidohydrolase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24234.11 Da        Isoelectric Point: 6.8873

>NTDB_id=675396 OG607_RS26535 WP_405728385.1 5752411..5753091(+) (vraR) [Streptomyces sp. NBC_01537 strain NBC 01537]
MTIRVVIVDDQDMVRSGFAALLSAQSDIDVVGEAPNGRLGIEVSRSTHPDVVLMDVRMPEMDGLEAARRLLDPPPGVVHR
PKVLMLTTFDIDDYVYAALHAGASGFLLKDAPVTELVQAVRVIAAGEALLAPSVTRRLIEDVARRRPAPSRGAQVRLNAL
TPREAEVLLLVAQGLSNREIAAGLVVAEQTVKTHMSRLLAKLGARDRAQLVVISYESGLVAPGRSA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=675396 OG607_RS26535 WP_405728385.1 5752411..5753091(+) (vraR) [Streptomyces sp. NBC_01537 strain NBC 01537]
ATGACTATTCGGGTGGTCATCGTGGACGACCAGGACATGGTGCGTTCGGGGTTCGCGGCGTTGCTCTCGGCGCAGAGCGA
CATCGACGTCGTGGGGGAGGCGCCCAACGGGCGGCTCGGCATCGAAGTCAGCCGCAGCACGCATCCCGACGTGGTGCTGA
TGGACGTACGGATGCCGGAGATGGACGGGCTGGAGGCGGCACGGCGGCTGCTCGATCCGCCGCCCGGTGTGGTGCACCGC
CCCAAGGTGCTCATGCTGACCACTTTCGACATCGACGACTACGTCTATGCGGCCCTGCACGCCGGAGCCAGCGGCTTCCT
GCTCAAGGACGCCCCGGTCACCGAATTGGTGCAGGCGGTGCGGGTGATCGCCGCCGGTGAGGCGCTGCTCGCTCCTTCCG
TCACCCGACGCCTCATCGAGGACGTGGCCCGGCGCCGCCCCGCGCCGAGCCGGGGCGCCCAGGTGCGGTTGAACGCACTG
ACTCCCCGCGAGGCGGAGGTTCTGCTGCTGGTCGCGCAGGGCCTGTCGAACAGGGAGATCGCCGCGGGCTTGGTGGTGGC
CGAGCAGACCGTCAAGACCCACATGAGCCGCCTGCTCGCCAAACTCGGTGCCCGTGACCGGGCACAACTCGTCGTCATCT
CCTACGAGTCGGGCTTGGTCGCTCCGGGCAGGTCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.455

97.345

0.394
  degU Bacillus subtilis subsp. subtilis str. 168

36.564

100

0.367