Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA90_RS04625 Genome accession   NZ_CP095096
Coordinates   994742..995083 (+) Length   113 a.a.
NCBI ID   WP_262588802.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 989742..1000083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA90_RS04595 (MUA90_04595) - 991141..991548 (+) 408 WP_105994324.1 F0F1 ATP synthase subunit epsilon -
  MUA90_RS04600 (MUA90_04600) - 991733..991966 (+) 234 WP_105994323.1 DUF1146 family protein -
  MUA90_RS04605 (MUA90_04605) murA 992069..993340 (+) 1272 WP_262588520.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA90_RS04610 (MUA90_04610) - 993360..993548 (+) 189 WP_262588521.1 DNA-directed RNA polymerase subunit beta -
  MUA90_RS04615 (MUA90_04615) fabZ 993553..993990 (+) 438 WP_105994320.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA90_RS04620 (MUA90_04620) - 994071..994508 (-) 438 WP_105994319.1 YwpF family protein -
  MUA90_RS04625 (MUA90_04625) ssb 994742..995083 (+) 342 WP_262588802.1 single-stranded DNA-binding protein Machinery gene
  MUA90_RS04630 (MUA90_04630) - 995793..996470 (+) 678 WP_262588522.1 transglycosylase family protein -
  MUA90_RS04635 (MUA90_04635) ltrA 997058..998344 (+) 1287 WP_172684412.1 group II intron reverse transcriptase/maturase -
  MUA90_RS04640 (MUA90_04640) - 998544..998693 (+) 150 WP_262588523.1 hypothetical protein -
  MUA90_RS13955 - 998653..999300 (+) 648 WP_316959801.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12840.29 Da        Isoelectric Point: 6.3216

>NTDB_id=675371 MUA90_RS04625 WP_262588802.1 994742..995083(+) (ssb) [Staphylococcus sp. IVB6181]
MIAKEESDIVYFNVATERNYNYQGKNQQSVDYINCKAFGKTARNIASYTTKGTLVGITGYMHSYKYEKDQQTHFGMELVV
ETIKFISTPNDAAHNHSIMEENEASPCFNSIHA

Nucleotide


Download         Length: 342 bp        

>NTDB_id=675371 MUA90_RS04625 WP_262588802.1 994742..995083(+) (ssb) [Staphylococcus sp. IVB6181]
ATTATCGCAAAGGAGGAATCAGACATTGTATACTTCAACGTTGCTACTGAAAGAAATTATAACTATCAAGGTAAAAATCA
ACAATCTGTAGACTACATTAATTGTAAAGCATTTGGCAAAACTGCCCGAAATATTGCCAGCTATACAACTAAAGGTACGC
TTGTAGGAATTACCGGCTACATGCATTCCTACAAATATGAGAAAGACCAGCAAACGCATTTCGGTATGGAGCTGGTTGTG
GAAACAATCAAATTTATCTCTACGCCGAATGATGCCGCTCACAATCATTCAATCATGGAAGAGAATGAAGCAAGCCCGTG
CTTTAATTCAATCCATGCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

55

88.496

0.487
  ssb Staphylococcus aureus MW2

53.398

91.15

0.487