Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JMUB0001_RS03940 | Genome accession | NZ_AP014956 |
| Coordinates | 824350..824745 (+) | Length | 131 a.a. |
| NCBI ID | WP_096389179.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis strain TW2795 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 819350..829745
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMUB0001_RS03910 (JMUB0001_763) | atpD | 819568..820980 (+) | 1413 | WP_002435865.1 | F0F1 ATP synthase subunit beta | - |
| JMUB0001_RS03915 (JMUB0001_764) | - | 821000..821404 (+) | 405 | WP_002435826.1 | F0F1 ATP synthase subunit epsilon | - |
| JMUB0001_RS03920 (JMUB0001_765) | - | 821545..821778 (+) | 234 | WP_002453705.1 | DUF1146 family protein | - |
| JMUB0001_RS03925 (JMUB0001_766) | murA | 821888..823153 (+) | 1266 | WP_002435807.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| JMUB0001_RS03930 (JMUB0001_767) | fabZ | 823198..823635 (+) | 438 | WP_002435844.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| JMUB0001_RS03935 (JMUB0001_768) | - | 823716..824159 (-) | 444 | WP_049427281.1 | YwpF-like family protein | - |
| JMUB0001_RS03940 (JMUB0001_769) | ssb | 824350..824745 (+) | 396 | WP_096389179.1 | single-stranded DNA-binding protein | Machinery gene |
| JMUB0001_RS03945 (JMUB0001_770) | - | 825140..825865 (+) | 726 | WP_002453702.1 | transglycosylase family protein | - |
| JMUB0001_RS03950 (JMUB0001_771) | tenA | 826160..826849 (+) | 690 | WP_002435801.1 | thiaminase II | - |
| JMUB0001_RS03955 (JMUB0001_772) | thiD | 826842..827663 (+) | 822 | WP_049427284.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| JMUB0001_RS03960 (JMUB0001_773) | thiM | 827656..828444 (+) | 789 | WP_002435520.1 | hydroxyethylthiazole kinase | - |
| JMUB0001_RS03965 (JMUB0001_774) | thiE | 828451..829089 (+) | 639 | WP_037551262.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.03 Da Isoelectric Point: 5.7032
>NTDB_id=67532 JMUB0001_RS03940 WP_096389179.1 824350..824745(+) (ssb) [Staphylococcus capitis strain TW2795]
MLNKIVIVGRLTKDAQIYEKENSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI
MLNKIVIVGRLTKDAQIYEKENSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI
Nucleotide
Download Length: 396 bp
>NTDB_id=67532 JMUB0001_RS03940 WP_096389179.1 824350..824745(+) (ssb) [Staphylococcus capitis strain TW2795]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGAATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGAATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
75.573 |
100 |
0.756 |
| ssb | Staphylococcus aureus MW2 |
74.809 |
100 |
0.748 |