Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUW37_RS07560 Genome accession   NZ_CP095090
Coordinates   1612631..1613503 (-) Length   290 a.a.
NCBI ID   WP_001829468.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SKN25lux     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1607631..1618503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUW37_RS07545 (MUW37_07545) xerC 1607932..1608822 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  MUW37_RS07550 (MUW37_07550) trmFO 1609047..1610354 (-) 1308 WP_001832560.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUW37_RS07555 (MUW37_07555) topA 1610379..1612448 (-) 2070 WP_001829508.1 type I DNA topoisomerase -
  MUW37_RS07560 (MUW37_07560) dprA 1612631..1613503 (-) 873 WP_001829468.1 DNA-processing protein DprA Machinery gene
  MUW37_RS07565 (MUW37_07565) - 1613844..1614059 (-) 216 Protein_1460 IS200/IS605 family transposase -
  MUW37_RS07570 (MUW37_07570) sucD 1614309..1615217 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  MUW37_RS07575 (MUW37_07575) sucC 1615239..1616405 (-) 1167 WP_002456569.1 ADP-forming succinate--CoA ligase subunit beta -
  MUW37_RS07580 (MUW37_07580) - 1616513..1617283 (-) 771 WP_001829514.1 ribonuclease HII -
  MUW37_RS07585 (MUW37_07585) ylqF 1617288..1618151 (-) 864 WP_001829495.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33726.62 Da        Isoelectric Point: 9.3618

>NTDB_id=675218 MUW37_RS07560 WP_001829468.1 1612631..1613503(-) (dprA) [Staphylococcus epidermidis strain SKN25lux]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=675218 MUW37_RS07560 WP_001829468.1 1612631..1613503(-) (dprA) [Staphylococcus epidermidis strain SKN25lux]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

56.944

99.31

0.566
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566