Detailed information NTG0675154

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHA89_RS24420
• Genome accession: NZ_CP109379
• Coordinates: 5340472..5341758 (+)
• Length: 428 a.a.
• NCBI ID: WP_215140032.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01546
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5335472..5346758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHA89_RS24385 (OHA89_24320)	-	5335991..5336185 (+)	195	WP_215140028.1	hypothetical protein	-
OHA89_RS24390 (OHA89_24325)	-	5336175..5336657 (-)	483	WP_406367102.1	DUF4231 domain-containing protein	-
OHA89_RS24405 (OHA89_24340)	tig	5337297..5338685 (+)	1389	WP_266609721.1	trigger factor	-
OHA89_RS24410 (OHA89_24345)	-	5338962..5339579 (+)	618	WP_215140031.1	ATP-dependent Clp protease proteolytic subunit	-
OHA89_RS24415 (OHA89_24350)	clpP	5339647..5340318 (+)	672	WP_285443927.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHA89_RS24420 (OHA89_24355)	clpX	5340472..5341758 (+)	1287	WP_215140032.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHA89_RS24425 (OHA89_24360)	-	5341928..5342203 (+)	276	WP_266609722.1	hypothetical protein	-
OHA89_RS24430 (OHA89_24365)	-	5342256..5343161 (-)	906	WP_406367103.1	hypothetical protein	-
OHA89_RS24435 (OHA89_24370)	-	5343288..5345909 (+)	2622	WP_257556331.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46954.85 Da
• Isoelectric Point: 4.7699

>NTDB_id=675154 OHA89_RS24420 WP_215140032.1 5340472..5341758(+) (clpX) [Streptomyces sp. NBC_01546]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGSKGIGFGATIRSKREIEASNQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=675154 OHA89_RS24420 WP_215140032.1 5340472..5341758(+) (clpX) [Streptomyces sp. NBC_01546]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAACTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCCGTCGCGGTCTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAACTCGCGAAGTCCAACATCCTGCTGCTCGGCCCCACCGGCTCCGGCAAGACGCTGCTCGCGCAGA
CGCTCGCCCGCATGCTCAACGTTCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGCGAGGGCGTTCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACGGCCTCCGTTCCGCCGCAGGGTGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGTGCGGGTTC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCCAGCAACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTGCTGACCTCCGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGTAACGCCCTGGTGAAGCAGTACCAGCGCCTGTTTGAACTCGACGGTGT
GGAACTGGACTTCGAGCGGGAAGCCCTCGAAGCCATCGCCGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCCCGCATCGTTCCGAAGGACCAGGGCCCGCAGGAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.93	93.925	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516