Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   MP619_RS02370 Genome accession   NZ_CP095081
Coordinates   438171..439097 (+) Length   308 a.a.
NCBI ID   WP_003049687.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 433171..444097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS02360 (MP619_02350) amiA 434633..436603 (+) 1971 WP_129555301.1 peptide ABC transporter substrate-binding protein Regulator
  MP619_RS02365 (MP619_02355) amiC 436669..438171 (+) 1503 WP_129555302.1 ABC transporter permease Regulator
  MP619_RS02370 (MP619_02360) amiD 438171..439097 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  MP619_RS02375 (MP619_02365) amiE 439106..440176 (+) 1071 WP_129555303.1 ABC transporter ATP-binding protein Regulator
  MP619_RS02380 (MP619_02370) amiF 440169..441092 (+) 924 WP_129555304.1 ATP-binding cassette domain-containing protein Regulator
  MP619_RS02385 (MP619_02375) - 441200..442222 (-) 1023 WP_129555386.1 IS30 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.93 Da        Isoelectric Point: 9.2024

>NTDB_id=675082 MP619_RS02370 WP_003049687.1 438171..439097(+) (amiD) [Streptococcus dysgalactiae strain WJ001]
METIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=675082 MP619_RS02370 WP_003049687.1 438171..439097(+) (amiD) [Streptococcus dysgalactiae strain WJ001]
ATGGAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTGACCATCT
TATTGATGAGTTTTATTTACCCAATGTTTGCAAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TACATTTGGCCCAATGCCGAATACTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTCTGGTATGGAGC
GCGTAACTCTATCCTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATTATCATTGTT
TTGACCTATTCATTAGGTGCTGGTTTTTGGAATTTGATTTTAGCTTTCTGTATCACTGGATGGATCGGTGTAGCTTACTC
TATCCGTGTGCAAATCTTACGTTACCGTGATTTGGAGTACAACCTTGCTAGCCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAGAACCTCTTGCCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCTTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACGACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTAACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCCAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.052

100

0.731
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731