Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   MP619_RS02380 Genome accession   NZ_CP095081
Coordinates   440169..441092 (+) Length   307 a.a.
NCBI ID   WP_129555304.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 441200..442228 440169..441092 flank 108


Gene organization within MGE regions


Location: 440169..442228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS02380 (MP619_02370) amiF 440169..441092 (+) 924 WP_129555304.1 ATP-binding cassette domain-containing protein Regulator
  MP619_RS02385 (MP619_02375) - 441200..442222 (-) 1023 WP_129555386.1 IS30 family transposase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34796.97 Da        Isoelectric Point: 6.4058

>NTDB_id=675084 MP619_RS02380 WP_129555304.1 440169..441092(+) (amiF) [Streptococcus dysgalactiae strain WJ001]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKSKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKKMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQVEVEKYKAEQ

Nucleotide


Download         Length: 924 bp        

>NTDB_id=675084 MP619_RS02380 WP_129555304.1 440169..441092(+) (amiF) [Streptococcus dysgalactiae strain WJ001]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACATTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGCTCTGGTGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCCAAGACCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAGCGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTAACTCGCTATCCTCACGAATTTTCAGGGGGGCAACGCCAGCGGATCGGT
ATCGCTAGAGCCCTAGTGATGAATCCCGAATTTGTCATTGCTGACGAACCTATCTCCGCTCTAGACGTCTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAAAATGCAAGCCGAAAAAGGACTGACATATCTTTTCATCGCCCACGACCTATCAGTTG
TTCGCTTCATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTGGAGGTTGCTGAAACAGAAGAACTGTTCAAT
AATCCTATCCACCCGTATACAAAATCTCTTTTATCAGCTGTTCCGATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAATCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTCT
GGGCTAATCAAGTAGAAGTTGAAAAGTATAAAGCAGAACAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.085

100

0.821
  amiF Streptococcus thermophilus LMD-9

81.759

100

0.818
  amiF Streptococcus salivarius strain HSISS4

81.433

100

0.814