Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SAFDA_RS07660 Genome accession   NZ_AP014942
Coordinates   1573500..1573946 (-) Length   148 a.a.
NCBI ID   WP_072433556.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568500..1578946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS07630 (SAFDA_1433) gcvPA 1569426..1570772 (-) 1347 WP_042727693.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAFDA_RS07635 (SAFDA_1434) gcvT 1570792..1571883 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SAFDA_RS07640 (SAFDA_1435) - 1572042..1572566 (-) 525 WP_001015121.1 shikimate kinase -
  SAFDA_RS07645 - 1572556..1572702 (-) 147 WP_001789879.1 hypothetical protein -
  SAFDA_RS07650 (SAFDA_1436) comGF 1572799..1573296 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAFDA_RS07655 (SAFDA_1437) comGE 1573214..1573513 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SAFDA_RS07660 (SAFDA_1438) comGD 1573500..1573946 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAFDA_RS07665 (SAFDA_1439) comGC 1573924..1574235 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAFDA_RS07670 (SAFDA_1440) comGB 1574249..1575319 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAFDA_RS07675 (SAFDA_1441) comGA 1575291..1576265 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SAFDA_RS07680 (SAFDA_1442) - 1576317..1576940 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SAFDA_RS07685 (SAFDA_1443) - 1576937..1577266 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAFDA_RS07690 (SAFDA_1444) - 1577266..1578252 (-) 987 WP_000161314.1 ROK family glucokinase -
  SAFDA_RS07695 - 1578249..1578452 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17150.36 Da        Isoelectric Point: 10.3312

>NTDB_id=67484 SAFDA_RS07660 WP_072433556.1 1573500..1573946(-) (comGD) [Staphylococcus aureus strain FDA209P]
MEKQLQIRKLSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=67484 SAFDA_RS07660 WP_072433556.1 1573500..1573946(-) (comGD) [Staphylococcus aureus strain FDA209P]
ATGGAGAAGCAGTTGCAAATTAGAAAGCTGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment