Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   SAFDA_RS07670 Genome accession   NZ_AP014942
Coordinates   1574249..1575319 (-) Length   356 a.a.
NCBI ID   WP_000776421.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569249..1580319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS07630 (SAFDA_1433) gcvPA 1569426..1570772 (-) 1347 WP_042727693.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAFDA_RS07635 (SAFDA_1434) gcvT 1570792..1571883 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SAFDA_RS07640 (SAFDA_1435) - 1572042..1572566 (-) 525 WP_001015121.1 shikimate kinase -
  SAFDA_RS07645 - 1572556..1572702 (-) 147 WP_001789879.1 hypothetical protein -
  SAFDA_RS07650 (SAFDA_1436) comGF 1572799..1573296 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAFDA_RS07655 (SAFDA_1437) comGE 1573214..1573513 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SAFDA_RS07660 (SAFDA_1438) comGD 1573500..1573946 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAFDA_RS07665 (SAFDA_1439) comGC 1573924..1574235 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAFDA_RS07670 (SAFDA_1440) comGB 1574249..1575319 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAFDA_RS07675 (SAFDA_1441) comGA 1575291..1576265 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SAFDA_RS07680 (SAFDA_1442) - 1576317..1576940 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SAFDA_RS07685 (SAFDA_1443) - 1576937..1577266 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAFDA_RS07690 (SAFDA_1444) - 1577266..1578252 (-) 987 WP_000161314.1 ROK family glucokinase -
  SAFDA_RS07695 - 1578249..1578452 (-) 204 WP_000087561.1 YqgQ family protein -
  SAFDA_RS07700 (SAFDA_1445) - 1578433..1579896 (-) 1464 WP_001017867.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41429.81 Da        Isoelectric Point: 10.0606

>NTDB_id=67486 SAFDA_RS07670 WP_000776421.1 1574249..1575319(-) (comGB) [Staphylococcus aureus strain FDA209P]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQLMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=67486 SAFDA_RS07670 WP_000776421.1 1574249..1575319(-) (comGB) [Staphylococcus aureus strain FDA209P]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAATTGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997

Multiple sequence alignment