Detailed information NTG0674766

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MT472_RS21695
• Genome accession: NZ_CP094999
• Coordinates: 4497470..4498312 (-)
• Length: 280 a.a.
• NCBI ID: WP_042944542.1
• Uniprot ID: -
• Organism: Klebsiella michiganensis strain fxq
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4492470..4503312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MT472_RS21670 (MT472_21670)	-	4493925..4494266 (-)	342	WP_004848570.1	RamA family antibiotic efflux transcriptional regulator	-
MT472_RS21675 (MT472_21675)	-	4494299..4495399 (-)	1101	WP_042944544.1	MBL fold metallo-hydrolase	-
MT472_RS21680 (MT472_21680)	-	4495590..4496171 (+)	582	WP_004848568.1	TetR/AcrR family transcriptional regulator	-
MT472_RS21685 (MT472_21685)	-	4496171..4496539 (+)	369	WP_014228308.1	MmcQ/YjbR family DNA-binding protein	-
MT472_RS21690 (MT472_21690)	nfsB	4496658..4497311 (+)	654	WP_032719567.1	oxygen-insensitive NAD(P)H nitroreductase	-
MT472_RS21695 (MT472_21695)	pilD	4497470..4498312 (-)	843	WP_042944542.1	A24 family peptidase	Machinery gene
MT472_RS21700 (MT472_21700)	-	4498374..4499114 (-)	741	WP_042944541.1	type II secretion system protein N	-
MT472_RS21705 (MT472_21705)	-	4499104..4499598 (-)	495	WP_042944538.1	type II secretion system protein M	-
MT472_RS21710 (MT472_21710)	gspL	4499585..4500790 (-)	1206	WP_042944537.1	type II secretion system protein GspL	-
MT472_RS21715 (MT472_21715)	gspK	4500790..4501776 (-)	987	WP_042944535.1	type II secretion system minor pseudopilin GspK	-
MT472_RS21720 (MT472_21720)	gspJ	4501773..4502372 (-)	600	WP_071889424.1	type II secretion system minor pseudopilin GspJ	-
MT472_RS21725 (MT472_21725)	gspI	4502369..4502734 (-)	366	WP_014228300.1	type II secretion system minor pseudopilin GspI	-
MT472_RS21730 (MT472_21730)	gspH	4502731..4503282 (-)	552	WP_014228299.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 280 a.a.
• Molecular weight: 30512.59 Da
• Isoelectric Point: 8.7485

>NTDB_id=674766 MT472_RS21695 WP_042944542.1 4497470..4498312(-) (pilD) [Klebsiella michiganensis strain fxq]
MTLLVAFSSTYPIIWWFGLGATGAIVGSFLNVVICRLPVMLEKHWQREALLQLSLPSPEPTARFNLVLPHSRCPYCHTPV
AARDNIPLLSFLLLKGKARCCGAPISAQYPLVEAATAALFVLTARVFPPGLALCGAWVFVSFLLILAVIDYHRQLLPDLL
TQPLLWIGLLFNLQSCFVSLPQATIGAVAGYLCLWCLFWLFKLLTGKDALGYGDFKLLAALGAWLGWQALPHVVLLAAIS
GLLFAFVQRGGAKKDLNQPLAFGPWLALAGVANMLLFQGI

Nucleotide

• Length: 843 bp

>NTDB_id=674766 MT472_RS21695 WP_042944542.1 4497470..4498312(-) (pilD) [Klebsiella michiganensis strain fxq]
ATGACATTATTAGTGGCTTTTTCATCCACGTATCCCATCATTTGGTGGTTTGGTCTTGGGGCGACAGGCGCTATCGTCGG
GAGTTTTCTCAATGTGGTGATCTGCCGCTTACCCGTAATGCTCGAGAAACACTGGCAGCGTGAGGCGTTGCTGCAGCTGT
CACTGCCTTCACCTGAACCCACGGCGCGCTTTAATCTGGTATTGCCGCACTCTCGTTGCCCATATTGTCATACTCCTGTT
GCCGCAAGGGATAATATACCTCTGCTGAGTTTCCTGTTGTTAAAGGGCAAGGCTCGCTGTTGCGGCGCGCCTATTTCCGC
GCAGTATCCGCTGGTTGAGGCGGCCACCGCCGCGCTGTTTGTCTTAACCGCGCGTGTATTTCCGCCGGGGCTGGCGCTGT
GTGGCGCCTGGGTATTCGTCTCTTTTTTATTGATCCTGGCCGTTATTGATTATCACCGACAGCTGCTACCCGATCTCCTG
ACGCAGCCCTTATTGTGGATCGGCTTACTGTTTAATCTTCAGTCGTGTTTTGTTTCGTTGCCGCAGGCGACGATTGGCGC
AGTGGCAGGATATCTCTGCTTGTGGTGCCTGTTCTGGCTGTTCAAGCTACTGACAGGCAAGGATGCGCTGGGCTATGGCG
ATTTTAAGCTACTGGCCGCGCTGGGGGCCTGGCTAGGCTGGCAAGCATTACCCCATGTGGTTTTACTGGCGGCGATAAGC
GGATTGCTGTTTGCGTTCGTACAGCGAGGAGGGGCAAAAAAAGATCTCAATCAGCCGCTGGCATTCGGCCCGTGGCTGGC
GTTAGCCGGTGTGGCAAATATGCTGCTATTTCAGGGTATTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.685	95.357	0.493
pilD	Vibrio campbellii strain DS40M4	48.708	96.786	0.471
pilD	Neisseria gonorrhoeae MS11	47.39	88.929	0.421
pilD	Acinetobacter nosocomialis M2	43.089	87.857	0.379
pilD	Acinetobacter baumannii D1279779	42.683	87.857	0.375