Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   L9B60_RS20570 Genome accession   NZ_CP094975
Coordinates   4485776..4488004 (+) Length   742 a.a.
NCBI ID   WP_249672664.1    Uniprot ID   -
Organism   Pseudomonas abieticivorans strain PIA16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4480776..4493004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L9B60_RS20550 - 4482582..4483205 (+) 624 WP_249672655.1 glutathione S-transferase family protein -
  L9B60_RS20555 - 4483327..4484259 (+) 933 WP_249672657.1 ABC transporter ATP-binding protein -
  L9B60_RS20560 - 4484256..4485035 (+) 780 WP_249672660.1 ABC transporter permease -
  L9B60_RS20565 - 4485112..4485630 (-) 519 WP_249672662.1 DUF2062 domain-containing protein -
  L9B60_RS20570 comA 4485776..4488004 (+) 2229 WP_249672664.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L9B60_RS20575 exbB 4488091..4488726 (+) 636 WP_249672666.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L9B60_RS20580 - 4488723..4489142 (+) 420 WP_249672668.1 biopolymer transporter ExbD -
  L9B60_RS20585 lpxK 4489149..4490159 (+) 1011 WP_249672671.1 tetraacyldisaccharide 4'-kinase -
  L9B60_RS20590 - 4490188..4490373 (+) 186 WP_249672673.1 Trm112 family protein -
  L9B60_RS20595 kdsB 4490370..4491134 (+) 765 WP_249672674.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L9B60_RS20600 - 4491134..4491598 (+) 465 WP_249672676.1 low molecular weight protein-tyrosine-phosphatase -
  L9B60_RS20605 murB 4491595..4492614 (+) 1020 WP_249672678.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 80104.72 Da        Isoelectric Point: 10.9013

>NTDB_id=674666 L9B60_RS20570 WP_249672664.1 4485776..4488004(+) (comA) [Pseudomonas abieticivorans strain PIA16]
MRTGFFALALGLLALRWLPALPPAWLLGVLALAGVASLRTRLYPVGCLLLGFCWACLSAQWALDDRLAPGLDGQTVWLEG
RVSGLPSTAGGSVRFELVEATSRRGELPKTLRLSWFNGPQVSSGERWRLAVTLKRARGLVNPGGQDSEAWMLARRIGASG
SVKDGQRLEQARDAWRDSVRRRLLAVDAQGREGALAALVLGDASGVSREDWEVLQATGTVHLLVISGTHIGLLAALIYGL
VAGLARWGLWPRRWPWLPWACGLAFAAALGYGLLAGFQVPVQRACIMLGMVLLWRLRFRQLGVFWPLLLALNTVLLIEPL
VSLQPGFWLSFAAVGVLLLVFAGRLGAWPWWRAWSRAQGLIAIGLLPVLLVLGLPVSVSGPLANLLAVPWISLAVLPTAL
SGSALLWLLPPLGEGLLWLAGGLINLLFAGLQLLAARLPAWAPPTLSPIAWGLMATGALLVLLPSGVPMRVLGWPLLLLA
LYPPVATLPANRAQVWQLDVGQGLAVLVRTQHHALLYDAGPRTPGLDAGERIVLPALRHLGVRRLDRMLISHAHLDHSGG
AAAIRRGLPVGQVLAGEPAATRGAHACEAGVQWQWDGVTFTTWRWADARDSNSSSCVLLVEANGEQLLLGGDIDSAAERA
LVASGLALKSRWLQSPHHGSRTSSTRLLLDAVQPDGALVSRGHRNSFGHPHPQVVERYQALGIEIHDNALHGALKIELGA
FADVWHERKRRRFWRDDVLPAE

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=674666 L9B60_RS20570 WP_249672664.1 4485776..4488004(+) (comA) [Pseudomonas abieticivorans strain PIA16]
ATGCGCACAGGTTTTTTCGCACTGGCACTGGGCTTGTTGGCCTTGCGCTGGCTGCCCGCACTGCCGCCGGCCTGGCTGCT
GGGCGTATTGGCGCTGGCGGGGGTGGCCAGCTTGCGCACGCGGCTGTACCCCGTGGGGTGTTTGCTGCTGGGTTTTTGCT
GGGCCTGCCTGTCAGCGCAATGGGCGCTGGATGATCGCTTGGCGCCGGGCTTGGACGGACAGACGGTGTGGTTGGAAGGG
CGCGTCAGCGGCTTGCCGAGCACCGCTGGTGGTTCGGTGCGTTTTGAACTCGTCGAGGCGACGTCGCGGCGCGGCGAGCT
GCCCAAAACCTTGCGCCTGAGCTGGTTCAACGGCCCGCAGGTCAGCAGTGGCGAGCGCTGGCGCCTGGCGGTGACGCTCA
AGCGAGCGCGTGGGCTGGTCAACCCAGGCGGGCAGGACAGCGAGGCATGGATGTTGGCCCGGCGCATTGGCGCCAGTGGC
AGCGTCAAGGATGGCCAGCGGCTGGAGCAGGCACGCGATGCCTGGCGTGACAGCGTGCGGCGACGCTTGCTGGCCGTGGA
TGCCCAGGGGCGGGAAGGCGCGTTGGCGGCGTTGGTGCTGGGCGATGCCTCGGGTGTGTCCCGCGAGGATTGGGAGGTGT
TGCAAGCGACCGGCACGGTTCACCTGTTGGTGATTTCGGGTACCCATATCGGCCTGCTCGCCGCGCTGATCTACGGTTTG
GTGGCGGGCCTTGCGCGATGGGGGCTATGGCCGCGCCGTTGGCCATGGCTGCCCTGGGCCTGCGGGCTGGCCTTTGCGGC
GGCGCTGGGTTATGGCCTGTTGGCCGGCTTCCAGGTACCGGTGCAGCGGGCCTGCATCATGCTCGGCATGGTTTTGTTGT
GGCGGTTGCGCTTTCGTCAGTTGGGCGTGTTCTGGCCCTTGCTACTGGCGTTGAACACGGTGTTGCTCATCGAACCGTTG
GTCAGCCTGCAGCCGGGGTTCTGGTTGTCATTTGCGGCGGTCGGGGTGTTGTTGCTGGTGTTCGCCGGTCGCCTGGGCGC
GTGGCCCTGGTGGCGAGCCTGGAGTCGCGCGCAAGGGTTGATTGCCATCGGTTTGCTGCCGGTGCTGCTGGTGTTGGGCC
TGCCGGTCAGCGTCAGCGGGCCCTTGGCCAACCTGCTGGCCGTGCCCTGGATCAGCCTGGCGGTGCTGCCGACGGCACTG
TCGGGCAGCGCTTTATTATGGCTGCTGCCGCCACTGGGCGAAGGTTTGCTCTGGCTGGCGGGCGGTTTGATCAACCTGCT
GTTTGCCGGGTTGCAACTGTTGGCGGCGCGCTTGCCGGCCTGGGCGCCACCCACCTTGTCACCGATAGCGTGGGGCTTGA
TGGCCACCGGTGCCTTGCTGGTGTTGTTGCCCAGTGGCGTGCCGATGCGGGTGCTGGGGTGGCCGCTATTGCTGTTGGCG
CTGTACCCGCCCGTGGCGACGCTGCCGGCCAACCGGGCGCAGGTCTGGCAGTTGGACGTGGGGCAGGGCTTGGCGGTTTT
GGTGCGCACCCAGCATCACGCCTTGCTCTACGATGCCGGGCCGCGCACGCCTGGGCTGGATGCCGGCGAGCGTATCGTCT
TGCCCGCGTTGCGCCACCTGGGTGTGCGCCGGCTGGACCGCATGCTGATCAGCCATGCGCACCTGGACCATTCCGGCGGT
GCCGCTGCCATCCGCCGCGGCCTGCCGGTGGGGCAGGTACTGGCAGGTGAGCCGGCGGCAACCCGCGGTGCACACGCCTG
CGAGGCGGGCGTCCAATGGCAGTGGGACGGCGTGACGTTCACCACCTGGCGCTGGGCCGATGCGCGGGACAGCAATTCGT
CGTCCTGCGTACTGTTGGTCGAAGCCAACGGCGAGCAACTGCTGCTGGGCGGTGATATCGATTCGGCCGCCGAGCGGGCG
TTGGTCGCCAGTGGCTTGGCGCTGAAGTCGCGCTGGCTACAGTCGCCGCACCATGGCAGTCGCACCTCCTCGACTCGGCT
ATTGCTCGATGCGGTGCAACCGGACGGCGCGCTGGTGTCGCGTGGCCACCGCAATTCCTTTGGCCACCCGCACCCGCAGG
TGGTGGAGCGCTACCAGGCGCTGGGCATCGAAATCCACGACAACGCCTTGCACGGGGCACTGAAAATCGAACTGGGGGCG
TTTGCCGACGTGTGGCACGAGCGCAAGCGACGGCGCTTCTGGCGTGATGACGTTTTGCCAGCCGAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-683)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.331

96.765

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.808

100

0.403