Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MTZ49_RS06870 Genome accession   NZ_CP094972
Coordinates   1430104..1432323 (+) Length   739 a.a.
NCBI ID   WP_264747603.1    Uniprot ID   -
Organism   Entomomonas sp. E2T0     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425104..1437323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTZ49_RS06850 (MTZ49_06845) - 1425909..1426643 (-) 735 WP_264747599.1 class I SAM-dependent methyltransferase -
  MTZ49_RS06855 (MTZ49_06850) - 1426719..1428065 (-) 1347 WP_264747600.1 flippase -
  MTZ49_RS06860 (MTZ49_06855) - 1428062..1429399 (-) 1338 WP_264747601.1 UDP-glucose dehydrogenase family protein -
  MTZ49_RS06865 (MTZ49_06860) - 1429569..1430099 (+) 531 WP_264747602.1 DUF4124 domain-containing protein -
  MTZ49_RS06870 (MTZ49_06865) comA 1430104..1432323 (+) 2220 WP_264747603.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MTZ49_RS06875 (MTZ49_06870) - 1432391..1433098 (+) 708 WP_264747604.1 MotA/TolQ/ExbB proton channel family protein -
  MTZ49_RS06880 (MTZ49_06875) - 1433095..1433532 (+) 438 WP_264747605.1 ExbD/TolR family protein -
  MTZ49_RS06885 (MTZ49_06880) lpxK 1433534..1434529 (+) 996 WP_264747606.1 tetraacyldisaccharide 4'-kinase -
  MTZ49_RS06890 (MTZ49_06885) - 1434587..1434772 (+) 186 WP_264747607.1 Trm112 family protein -
  MTZ49_RS06895 (MTZ49_06890) kdsB 1434769..1435536 (+) 768 WP_264747608.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MTZ49_RS06900 (MTZ49_06895) - 1435536..1435994 (+) 459 WP_264747609.1 low molecular weight protein-tyrosine-phosphatase -
  MTZ49_RS06905 (MTZ49_06900) murB 1435991..1437007 (+) 1017 WP_264747610.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82032.65 Da        Isoelectric Point: 9.8431

>NTDB_id=674625 MTZ49_RS06870 WP_264747603.1 1430104..1432323(+) (comA) [Entomomonas sp. E2T0]
MRIALITFIIGLLSIRFFPALPSLSACIILACVGLTLLPWRLYPLGMLLIGIAWGCYGASQTINDRLNPALDGKTIWIEG
TIAGLPEQAEQVIRFQLKNAKAQDIQLPTNIRLAWYKGEQVATGESWRLQVRLKYPRGTINPYVFDYEAWLTAKHIGATG
TVKQAQRLQENTNIINWRYQLRQKMLAQDTANQTAGLIALVLGDGSALSRSQWQVLQETGTVHLMVISGQHITLLAGFLY
FFIAGLVRLGWWPKRLPWLPIACGLAMLGALAYGLLAGFEVPVQRACIMLALVLLWRLRFRHLGVATPFLMALAIVLIAD
PLASLQAGFWLSFSAVAILLLLLSGRLNYNNWWLSAINIQWAITIGLIPVLLVLLLPVSLTSPIANLIAVPIVSFIIVPF
ALLGTLLIGIPYVGALLLWLAGYTLKLMFIILTFVAEVVPAWVAPMPPWWAFLLAFLGVFLILLPRGALLRVFGIVFCLP
LFFVNTVNIKEDQAEVTVFDVGQGLSVLVRTKNHSLLYDTGPSFGDFNLGERIITPSLQRQGVKLLDKIVVSHADTDHAG
GLQAITKRVTVQQLISGEPDKLVSELMTHPCQNNSWQWDGVKFSLWQWSAATKGNDASCVLLVEAKGETLLLTGDISSKA
EQAWFAENNRQINWLLVPHHGSKNSSSWNFLAATKPQYIIVSRGWLNPFNHPNLATLERYQKVGAKVEDTALAGALQINL
GTFQSATRQRDTKYFWRKQ

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=674625 MTZ49_RS06870 WP_264747603.1 1430104..1432323(+) (comA) [Entomomonas sp. E2T0]
ATGCGGATAGCGTTAATAACTTTTATCATTGGATTGTTATCTATTCGTTTTTTTCCTGCGTTACCCTCACTTTCAGCTTG
TATCATATTGGCTTGTGTGGGGCTAACTTTATTACCTTGGCGACTTTATCCACTAGGCATGCTGTTAATAGGTATTGCAT
GGGGATGTTATGGGGCAAGTCAAACCATTAATGATCGTTTAAATCCAGCATTAGATGGCAAAACAATATGGATAGAGGGC
ACTATAGCTGGTTTACCAGAGCAAGCTGAACAGGTTATTCGCTTTCAATTAAAAAATGCCAAAGCACAAGATATTCAGTT
ACCTACCAATATAAGGCTTGCTTGGTATAAAGGTGAACAAGTAGCTACTGGGGAGTCTTGGCGTCTACAAGTAAGATTAA
AATACCCTAGAGGAACAATTAACCCGTATGTTTTCGATTATGAAGCATGGCTAACAGCCAAGCATATTGGTGCAACAGGT
ACGGTTAAACAAGCACAACGTTTACAAGAAAACACCAATATTATTAACTGGCGTTATCAACTACGTCAAAAAATGTTAGC
ACAAGATACTGCTAACCAAACAGCAGGATTAATCGCTTTAGTATTAGGTGATGGTTCTGCATTATCTAGAAGTCAATGGC
AAGTATTACAAGAAACGGGCACTGTCCATTTAATGGTTATTTCGGGGCAGCATATTACGTTATTAGCAGGATTTCTTTAT
TTTTTTATAGCAGGCTTAGTGCGTTTAGGGTGGTGGCCTAAAAGACTACCATGGTTACCTATAGCTTGTGGTTTAGCTAT
GTTAGGTGCTTTAGCTTATGGTTTATTGGCAGGGTTTGAAGTACCTGTACAGCGTGCTTGTATTATGTTGGCACTCGTGT
TGTTATGGCGTTTAAGGTTTCGTCATTTAGGGGTAGCCACACCGTTTTTAATGGCTTTAGCTATTGTTCTTATTGCAGAC
CCTTTAGCCAGTTTACAAGCTGGTTTTTGGCTATCGTTTAGTGCAGTAGCCATCTTATTATTGTTGCTTTCAGGGCGACT
GAATTATAACAATTGGTGGTTAAGTGCTATAAACATTCAGTGGGCAATTACCATAGGTTTAATACCTGTACTATTGGTTT
TGCTATTGCCTGTTAGTTTAACCAGCCCTATTGCCAATTTAATAGCAGTACCTATTGTTAGTTTTATTATTGTACCTTTT
GCATTATTGGGGACTTTACTCATAGGTATTCCCTATGTAGGCGCACTATTGCTTTGGTTGGCGGGTTATACTTTAAAGTT
AATGTTTATTATTTTGACTTTTGTTGCTGAAGTAGTACCTGCTTGGGTAGCCCCTATGCCTCCTTGGTGGGCTTTTTTAT
TAGCTTTTTTAGGCGTATTTTTAATATTGTTACCAAGAGGTGCATTACTTCGAGTATTTGGCATAGTTTTTTGTTTGCCA
TTATTTTTTGTTAACACAGTAAATATTAAAGAAGATCAAGCAGAAGTAACAGTGTTTGATGTAGGACAAGGGTTGTCCGT
ATTAGTGAGAACTAAAAATCATAGCTTATTATATGATACAGGTCCCAGTTTTGGTGATTTTAATTTGGGAGAGAGGATTA
TTACTCCCTCTCTACAGCGACAAGGGGTTAAACTACTCGATAAAATAGTTGTTTCTCATGCAGATACAGATCATGCAGGC
GGACTACAAGCAATTACTAAGCGTGTAACCGTGCAACAGTTAATAAGTGGTGAGCCAGATAAATTAGTGAGTGAATTAAT
GACTCACCCTTGTCAAAATAATAGTTGGCAGTGGGATGGGGTAAAATTCTCATTATGGCAGTGGTCAGCAGCAACAAAGG
GTAATGATGCATCTTGCGTATTATTGGTAGAAGCAAAGGGTGAAACGTTATTATTAACAGGTGATATTTCAAGTAAAGCT
GAACAAGCTTGGTTTGCAGAAAATAACAGGCAGATTAATTGGCTATTAGTGCCACATCACGGTAGTAAGAATAGTTCATC
ATGGAACTTTTTAGCGGCTACAAAGCCTCAATATATAATTGTTTCAAGAGGATGGTTAAATCCATTTAATCATCCAAACT
TAGCCACTCTGGAGCGTTATCAAAAAGTGGGAGCTAAGGTTGAGGATACAGCATTAGCAGGTGCTTTACAGATTAACTTA
GGTACATTTCAATCTGCTACAAGGCAGCGTGATACAAAATATTTTTGGCGAAAACAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(200-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-667)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

52.288

97.564

0.51
  comA Ralstonia pseudosolanacearum GMI1000

33.046

100

0.363