Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG278_RS20280 Genome accession   NZ_CP109337
Coordinates   4533816..4535213 (-) Length   465 a.a.
NCBI ID   WP_328329767.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4528816..4540213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG278_RS20255 (OG278_20280) - 4529092..4529643 (-) 552 WP_266854649.1 SigE family RNA polymerase sigma factor -
  OG278_RS20260 (OG278_20285) - 4529819..4530874 (-) 1056 WP_328329760.1 A/G-specific adenine glycosylase -
  OG278_RS20265 (OG278_20290) - 4530891..4531499 (-) 609 WP_328329762.1 phosphatase PAP2 family protein -
  OG278_RS20270 (OG278_20295) - 4531683..4532531 (+) 849 WP_328335557.1 hypothetical protein -
  OG278_RS20275 (OG278_20300) disA 4532635..4533759 (-) 1125 WP_328329764.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG278_RS20280 (OG278_20305) radA/sms 4533816..4535213 (-) 1398 WP_328329767.1 DNA repair protein RadA Machinery gene
  OG278_RS20285 (OG278_20310) - 4535396..4537102 (+) 1707 WP_328329769.1 hypothetical protein -
  OG278_RS20290 (OG278_20315) - 4537166..4537996 (-) 831 WP_328329771.1 hypothetical protein -
  OG278_RS20295 (OG278_20320) - 4538074..4539006 (+) 933 WP_328329773.1 Ppx/GppA phosphatase family protein -
  OG278_RS20300 (OG278_20325) - 4539074..4539892 (+) 819 WP_328329776.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48783.84 Da        Isoelectric Point: 7.7378

>NTDB_id=674502 OG278_RS20280 WP_328329767.1 4533816..4535213(-) (radA/sms) [Streptomyces sp. NBC_00455]
MATRAKTRERPSYRCTECGYTTAKWLGRCPECQTWGTVEEQGGGPAVRTTAAGPVSSAAVPIGQVDSRTATARSTGVTEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGSDHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDIPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVIEVADMGDALRALPRRSRARAPQDE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=674502 OG278_RS20280 WP_328329767.1 4533816..4535213(-) (radA/sms) [Streptomyces sp. NBC_00455]
ATGGCCACCCGTGCGAAGACCAGAGAACGGCCGTCCTACCGCTGCACCGAATGCGGGTACACGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGACGTGGGGGACGGTCGAGGAGCAGGGCGGCGGGCCCGCCGTGCGGACGACCGCGGCCGGTC
CGGTCAGCAGCGCCGCCGTCCCCATCGGCCAGGTCGACAGCCGGACGGCGACAGCGCGTTCGACTGGGGTCACCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTGCCGGGCGCCGTGGTGCTGCTCGCCGGTGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGATGTCGCGGCGAAGGCGGCGGGCTCCGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCCGCGAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAACGACCACCTGTATCTGGCCGCCGAGACGGATCTCGCAGCGGTGCTC
GGCCACCTCGACGCGGTGAAGCCGTCCCTGCTGGTCCTGGACTCCGTGCAGACGGTGGCCTCACCCGAACTGGACGGTGC
GCCGGGCGGCATGGCGCAGGTGCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGGCCACGCTGC
TCGTCGGGCACGTCACGAAGGACGGCGCCATCGCCGGGCCCCGGCTTCTTGAGCACCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACAGATACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACGCGCCGTGACGAACCGGTGCCCG
GGACGTGTCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCACCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTGTCGATGATGCTCGCCGTCCTCGAACAGCGCGGCAG
GATCAGCGCGCTCGGCAAGCGCGACATCTACACGGCGACGGTCGGCGGCGTGAAGCTCACCGAACCGGCCGCCGACCTGG
CCGTCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACATCCCGCTCCCGAAGAACCTGGTGGCGATCGGCGAAGTGGGTCTC
GCGGGCGAGGTCAGAAGAGTCACCGGCGTCCAGCGCAGGCTCGCCGAGGCACACCGTCTCGGCTTCACCCACGCCCTCGT
ACCGACCGACCCGGGGAAGGTCCCCGCAGGGATGAAGGTCATCGAAGTGGCGGACATGGGAGACGCGCTGCGGGCCCTTC
CGCGCCGTTCAAGGGCCCGCGCGCCCCAGGACGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.077

97.849

0.422
  radA Streptococcus mitis SK321

41.85

97.634

0.409
  radA Streptococcus mitis NCTC 12261

41.85

97.634

0.409
  radA Streptococcus pneumoniae TIGR4

41.907

96.989

0.406
  radA Streptococcus pneumoniae R6

41.907

96.989

0.406
  radA Streptococcus pneumoniae Rx1

41.907

96.989

0.406
  radA Streptococcus pneumoniae D39

41.907

96.989

0.406