Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA59_RS19835 Genome accession   NZ_CP109333
Coordinates   4277258..4278670 (+) Length   470 a.a.
NCBI ID   WP_406427964.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01589     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4272258..4283670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA59_RS19820 (OHA59_19850) - 4273354..4274301 (-) 948 WP_326604436.1 Ppx/GppA phosphatase family protein -
  OHA59_RS19825 (OHA59_19855) - 4274342..4275211 (+) 870 WP_267004539.1 hypothetical protein -
  OHA59_RS19830 (OHA59_19860) - 4275243..4277018 (-) 1776 WP_406427963.1 BACON domain-containing protein -
  OHA59_RS19835 (OHA59_19865) radA/sms 4277258..4278670 (+) 1413 WP_406427964.1 DNA repair protein RadA Machinery gene
  OHA59_RS19840 (OHA59_19870) disA 4278751..4279875 (+) 1125 WP_030972387.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA59_RS19845 (OHA59_19875) - 4280024..4280833 (-) 810 WP_406427965.1 hypothetical protein -
  OHA59_RS19850 (OHA59_19880) - 4281683..4282585 (+) 903 WP_313937908.1 A/G-specific adenine glycosylase -
  OHA59_RS19855 (OHA59_19885) - 4282761..4283411 (+) 651 WP_406427967.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49579.61 Da        Isoelectric Point: 8.0051

>NTDB_id=674412 OHA59_RS19835 WP_406427964.1 4277258..4278670(+) (radA/sms) [Streptomyces sp. NBC_01589]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVANMGDALSVLPRRSRTEAPREADARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=674412 OHA59_RS19835 WP_406427964.1 4277258..4278670(+) (radA/sms) [Streptomyces sp. NBC_01589]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAATGGCT
CGGCCGATGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGGACGACGGCGGCCG
GACGCGTCAGCTCGGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGCCGACCGGGGTCGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCCGCCAAGTCCGCCAGCGACGAGCACCGCACCCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGAGGG
CGCACCCGGCGGGATGGCACAGGTCCGGGAGGTGGCCGGTGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCACGGCTGCTGGAGCACCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGACATGCGCGCCTCCGGCTGGTCCGGGGCGTGAAAAACCGGTACGGGGCGACCGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGTCCGGCCTCTTCCTCACCCGGCGCGACGAGCCCGTGC
CGGGCACCTGTCTGACGGTCACGCTGGAGGGGCGGCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCGCAG
ATCCCCTCCCCGCGGCGCACCACCTCCGGTCTGGAGACGTCCCGGGTCTCGATGATGCTGGCGGTTCTGGAGCAGCGCGG
CCGGATCAGCGCACTCGGCAAGCGGGACATCTATAGCGCCACGGTCGGCGGCGTGAAGCTTTCCGAACCCGCCGCGGACC
TTGCGATCGCGCTGGCGCTGGCCAGCGCGGCAAGTGACACACCGCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTCACGGGGGTTCAGCGGAGACTGGCCGAAGCACACCGCCTGGGCTTCACCCACGCGCT
GGTCCCGACCGACCCGGGGAGGGTTCCATCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTCAGCGTGC
TCCCGCGCCGGTCTCGCACAGAGGCCCCACGGGAGGCCGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.17

0.415
  radA Streptococcus pneumoniae Rx1

43.823

91.277

0.4
  radA Streptococcus pneumoniae D39

43.823

91.277

0.4
  radA Streptococcus pneumoniae R6

43.823

91.277

0.4
  radA Streptococcus pneumoniae TIGR4

43.823

91.277

0.4
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4