Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   MUB28_RS02200 Genome accession   NZ_CP094945
Coordinates   408889..409332 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain VHProbi R08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 403889..414332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB28_RS02180 (MUB28_02180) - 404413..405165 (-) 753 WP_014727345.1 NUDIX hydrolase -
  MUB28_RS02185 (MUB28_02185) - 405229..406334 (-) 1106 Protein_380 AAA family ATPase -
  MUB28_RS02190 (MUB28_02190) gdhA 406678..408030 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  MUB28_RS02195 (MUB28_02195) - 408288..408698 (+) 411 WP_011680804.1 peptide deformylase -
  MUB28_RS02200 (MUB28_02200) rcrR 408889..409332 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  MUB28_RS02205 (MUB28_02205) rcrP 409336..411150 (+) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  MUB28_RS02210 (MUB28_02210) rcrQ 411140..412918 (+) 1779 WP_014727347.1 ABC transporter ATP-binding protein Regulator
  MUB28_RS02215 (MUB28_02215) - 413074..413445 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=674394 MUB28_RS02200 WP_002945408.1 408889..409332(+) (rcrR) [Streptococcus thermophilus strain VHProbi R08]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=674394 MUB28_RS02200 WP_002945408.1 408889..409332(+) (rcrR) [Streptococcus thermophilus strain VHProbi R08]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537